European Galaxy tools (2516 and counting)


Get Data

Send Data

Collection Operations

Expression Tools


General Text Tools

Text Manipulation

Filter and Sort

Join, Subtract and Group


Genomic File Manipulation

Convert Formats

FASTA/FASTQ

FASTQ Quality Control

Quality Control

SAM/BAM

BED

VCF/BCF

Nanopore


Common Genomics Tools

Operate on Genomic Intervals

Fetch Sequences / Alignments


Genomics Analysis

Annotation

Multiple Alignments

Assembly

Mapping

Variant Calling

Genome editing

RNA-Seq

RNA Analysis

Peak Calling

Epigenetics

Phylogenetics

Phenotype Association

Single-cell


Genomics Toolkits

Picard

deepTools

Gemini

EMBOSS

NCBI Blast

HiCExplorer

RAD-seq

GraphClust

MiModD


Metagenomics

Metagenomic Analysis

Qiime

Mothur

DNA Metabarcoding

Virology


Proteomics, Metabolomics, Chemistry

Proteomics

Metabolomics

ChemicalToolBox


Statistics and Visualisation

Statistics

Machine Learning

Graph/Display Data


Miscellaneous Tools

Evolution

Motif Tools

Test Tools

GIS Data Handling

Animal Detection on Acoustic Recordings

Regional Variation

Genome Diversity

Climate Analysis

Apollo

Imaging

Species abundance

Interactive tools

OBO Ontology manipulation

HCA-Single Cell

SAM/BAM Manipulation

Metagenomic Analysis

GATK Tools