Data Driven Research for Everyone
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run on anything, from a laptop, to large clusters, to the cloud
Training Infrastructure as a Service
We want to help you conduct your training seminars. You provide the training, we provide you training infrastructure at no cost.
Why use UseGalaxy.eu training infrastructure?
- Private queue, no wait times
- No Galaxy Maintenance
- No Galaxy Administration
Simply fill out the infrastructure request form and we'll get back to you shortly.
UseGalaxy.eu: The European Galaxy instance
- Thousands of documented and maintained tools
- Free registration
- 250 GB per user (500 GB for ELIXIR members)
- On demand training capacity
And even more!
The UseGalaxy.eu team supports many projects in the Galaxy community:
- Galaxy HiCExplorer to process, analyse and visualize Hi-C data
We regularly provide workshops
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
We are aiming to maintain high competency and provide high quality data analysis services to all our Galaxy users.
Therefore we request that you acknowledge this service by including the members of the Freiburg Galaxy Team as co-authors if they have made a significant intellectual and/or organizational contribution to the work described (conceptualization, design, data analysis, data interpretation and/or input into drafting, revising or writing any portion of the manuscript).
Individuals who have contributed to the project, but whose contributions do not rise to the level justifying authorship, can be recognized in an acknowledgements section of the manuscript as follows:
The authors acknowledge the support of the Freiburg Galaxy Team: Person X and Prof. Rolf Backofen, Bioinformatics, University of Freiburg, Germany funded by Collaborative Research Centre 992 Medical Epigenetics (DFG grant SFB 992/1 2012) and German Federal Ministry of Education and Research (BMBF grant 031 A538A de.NBI-RBC).
Additional funding of projects and/or provision of material expenses are welcome as well, to help support our growing Galaxy community in Freiburg.
We want you to feel that useGalaxy.eu is a reliable service, so we are promising to give you advanced warning (when possible) about upcoming downtimes or any events that might degrade the availability of useGalaxy.eu.
- This is a best effort, as much warning as we possibly can
- But we cannot make any regarding downtime notices
- The numbers we provide here are rough estimates
|<5 minutes||possibly without notice|
|1 hour||1 day|
|1 day||1 week|
|1 week||1 month|
Our Data Retention Policy
Registered UsersUser data on UseGalaxy.eu (i.e. datasets, histories) will be available as long as they are not deleted by the user. Once marked as deleted the datasets will be permanently removed within 14 days. If the user "purges" the dataset in the Galaxy, it will be removed immediately, permanently. An extended quota can be requested for a limited time period in special cases.
Unregistered UsersProcessed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics.) If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted.
GDPR ComplianceThe Galaxy service complies with the EU General Data Protection Regulation (GDPR). You can read more about this on our Terms and Conditions.
The maintenance and administration of UseGalaxy.eu is done primarily by the
Freiburg Galaxy Team, an academic group. We work together with other academic
groups across Europe and with the US Galaxy team.
We make a best effort to provide high uptime. In the last 30 days we achieved:
The Freiburg Team tries to maintain a balance between service uptime and the health of the administrators behind the service.
Sometimes we are able to achieve this, sometimes due to factors outside our control, our service is temporarily inaccessible.
Domain-specific European Galaxies
UseGalaxy.eu hosts several domain specific versions of the usegalaxy.eu server. You can access any of these servers and find all of your data, with a set of tools focused on one specific domain.
|metagenomics.usegalaxy.eu||An instance focused on metagenomics tools like Mothur and Qiime|
|proteomics.usegalaxy.eu||An instance focused around proteomics|
|hicexplorer.usegalaxy.eu||The place to go for all of your HiC analyses|
|graphclust.usegalaxy.eu||An instance focused on structural clustering of RNA secondary structures|
|clipseq.usegalaxy.eu||The place to go for all of your CLIP analyses|
|rna.usegalaxy.eu||The RNA workbench|
Feb 11, 2019
New Paper on "Pou5f3, SoxB1, and Nanog remodel chromatin on High Nucleosome Affinity Regions at Zygotic Genome Activation."
Feb 11, 2019
New Paper on "Impact of angiogenic activation and inhibition on miRNA profiles of human retinal endothelial cells."
Feb 9, 2019
Tool Quest: Do you know the answer?
Jan 27, 2019
Vote for the Training during the next Galaxy Community Conference
Jan 26, 2019
Learn how the NASA uses Galaxy!
Jan 25, 2019
The GOEnrichment tool and tutorial are now available on Galaxy, by Daniel Sobral
Jul 1, 2019 - Jul 6, 2019
2019 Galaxy Community Conference (GCC2019)
Apr 23, 2019 - Apr 26, 2019
Galaxy training and hackathon at Roscoff/France
Mar 13, 2019 - Mar 14, 2019
Miracum whole-exome sequencing pipeline workshop in Freiburg
Mar 6, 2019 - Mar 8, 2019
Galaxy for linking Bisulfite sequencing with RNA sequencing 06.-08.03.2019 in Rostock
Feb 25, 2019 - Mar 1, 2019
Galaxy HTS data analysis workshop in Freiburg
Feb 21, 2019