Data Driven Reseach for Everyone
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run on anything, from a laptop, to large clusters, to the cloud
Training Infrastructure as a Service
We want to help you conduct your training seminars. You provide the training, we provide you training infrastructure at no cost.
Why use UseGalaxy.eu training infrastructure?
- Private queue, no wait times
- No Galaxy Maintenance
- No Galaxy Administration
Simply fill out the infrastructure request form and we'll get back to you shortly.
UseGalaxy.eu: The European Galaxy instance
- Thousands of documented and maintained tools
- Free registration
- 250 GB per user (500 GB for ELIXIR members)
- On demand training capacity
And even more!
The UseGalaxy.eu team supports many projects in the Galaxy community:
- Galaxy HiCExplorer to process, analyse and visualize Hi-C data
We regularly provide workshops
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
We are aiming to maintain high competency and provide high quality data analysis services to all our Galaxy users.
Therefore we request that you acknowledge this service by including the members of the Freiburg Galaxy Team as co-authors if they have made a significant intellectual and/or organizational contribution to the work described (conceptualization, design, data analysis, data interpretation and/or input into drafting, revising or writing any portion of the manuscript).
Individuals who have contributed to the project, but whose contributions do not rise to the level justifying authorship, can be recognized in an acknowledgements section of the manuscript as follows:
The authors acknowledge the support of the Freiburg Galaxy Team: Person X and Prof. Rolf Backofen, Bioinformatics, University of Freiburg, Germany funded by Collaborative Research Centre 992 Medical Epigenetics (DFG grant SFB 992/1 2012) and German Federal Ministry of Education and Research (BMBF grant 031 A538A de.NBI-RBC).
Additional funding of projects and/or provision of material expenses are welcome as well, to help support our growing Galaxy community in Freiburg.
We want you to feel that useGalaxy.eu is a reliable service, so we are promising to give you advanced warning (when possible) about upcoming downtimes or any events that might degrade the availability of useGalaxy.eu.
- This is a best effort, as much warning as we possibly can
- But we cannot make any regarding downtime notices
- The numbers we provide here are rough estimates
|<5 minutes||possibly without notice|
|1 hour||1 day|
|1 day||1 week|
|1 week||1 month|
Our Data Retention Policy
Registered UsersUser data on UseGalaxy.eu (i.e. datasets, histories) will be available as long as they are not deleted by the user. Once marked as deleted the datasets will be permanently removed within 14 days. If the user "purges" the dataset in the Galaxy, it will be removed immediately, permanently. An extended quota can be requested for a limited time period in special cases.
Unregistered UsersProcessed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics.) If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted.
GDPR ComplianceThe Galaxy service will be compliant to the EU General Data Protection Regulation starting May, 25th 2018. You can read more about this on our GDPR page: usegalaxy.eu/terms
The maintenance and administration of UseGalaxy.eu is done primarily by the
Freiburg Galaxy Team, an academic group. We work together with other academic
groups across Europe and with the US Galaxy team.
We make a best effort to provide high uptime. In the last 30 days we achieved:
The Freiburg Team tries to maintain a balance between service uptime and the health of the administrators behind the service.
Sometimes we are able to achieve this, sometimes due to factors outside our control, our service is temporarily inaccessible.
Domain-specific European Galaxies
UseGalaxy.eu hosts several domain specific versions of the usegalaxy.eu server. You can access any of these servers and find all of your data, with a set of tools focused on one specific domain.
|metagenomics.usegalaxy.eu||An instance focused on metagenomics tools like Mothur and Qiime|
|hicexplorer.usegalaxy.eu||The place to go for all of your HiC analyses|
Oct 17, 2018
Heinz tools for network analysis over transcriptomics datasets
Oct 15, 2018
Tutorial of the Month: "Galaxy 101", selected by Yvan Le Bras
Oct 10, 2018
New Paper on "Endothelial cell mineralocorticoid receptors oppose VEGF-induced gene expression and angiogenesis"
Oct 10, 2018
New article 'Datenanalyse mit dem Galaxy Server'
Oct 8, 2018
Initial release of `gxadmin` tool
Oct 2, 2018
Tutorial of the Month: Maria Doyle selected "From peaks to genes"
Feb 25, 2019 - Mar 1, 2019
Galaxy workshop on HTS data analysis
Dec 6, 2018 - Dec 7, 2018
Galaxy RNA-seq data analysis workshop in Freiburg
Nov 19, 2018 - Nov 20, 2018
European Galaxy Days
Nov 15, 2018
GTN CoFest on Training Material
Nov 12, 2018 - Nov 16, 2018
Elixir Biohackathon 2018
Oct 17, 2018 - Oct 19, 2018