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Galaxy Europe / Erasmus MC
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Data Driven Reseach for Everyone

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.

  • Accessible: Users can easily configure and run tools without the need to write code, all via an user-friendly web-based interface.
  • Reproducible: Galaxy captures the full metadata required so that any user can not only understand but also reproduce the complete computational analysis.
  • Transparent: Users can extract, share and publish analyses via interactive, web-based documents that can enhance analyses with user-supplied annotation.
  • Scalable: Galaxy scales: it can run on a local computer, on a large cluster or on the cloud

FTP upload

For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.

As an example, a screenshot of the configuration settings for FileZilla can be found here

Training Materials

The Galaxy Community maintains a wide variety of training materials at https://training.galaxyproject.org

Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!

Galaxy training materials page

Our team

This Galaxy is maintained by the Bioinformatics group of the department of Pathology.

For any questions regarding this Galaxy server, please contact us.

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News

Nov 1, 2018

Enthusiastic Response to the First ELIXIR-NL Galaxy Training Course in the Netherlands

May 3, 2018

Nanopolish tools for signal-level analysis of Oxford Nanopore sequencing data is now available in Galaxy

Events

Nov 12, 2018 - Nov 16, 2018

Elixir Biohackathon 2018

Nov 6, 2018

NGS Introduction using Galaxy

Oct 17, 2018 - Oct 19, 2018

Bioinformatics for Translational Medicine using Galaxy: see it, do it, teach it!

Aug 27, 2018 - Aug 29, 2018

Next Generation Sequencing data analysis, LUMC

Aug 17, 2018

GTN CoFest on Metagenomics Training Material

Jul 27, 2018

System Administrator Appreciation Day

The EMC Galaxian server is maintained by the Bioinformatics group in the department of Pathology of the Erasmus Medical Center, Rotterdam, The Netherlands.

To inquire about this Galaxy server, increasing your disk quotum, or possibilities for collaborative projects, please contact one of our team

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