Jekyll2024-03-19T02:52:24+01:00https://galaxyproject.eu/feed.xmlGalaxy EuropeThe European Galaxy InstanceUseGalaxy.eu Tool Updates for 2024-03-172024-03-17T00:00:00+01:002024-03-17T00:00:00+01:00https://galaxyproject.eu/posts/2024/03/17/tool-update<p>On 2024-03-17, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#436/">Jenkins Build #436</a></p>
<h2 id="graphdisplay-data">Graph/Display Data</h2>
<ul>
<li>pygenometracks was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pygenometracks/36b848d5f3ec">36b848d5f3ec</a></li>
</ul>
<h2 id="gis-data-handling">GIS Data Handling</h2>
<ul>
<li>interpolation_run_idw_interpolation was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/interpolation_run_idw_interpolation/b4b9edf9ea27">b4b9edf9ea27</a></li>
<li>otb_band_math was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/otb_band_math/0ed34e3202b9">0ed34e3202b9</a></li>
<li>otb_mean_shift_smoothing was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/otb_mean_shift_smoothing/6c6e8b16dba6">6c6e8b16dba6</a></li>
</ul>
<h2 id="metabolomics">Metabolomics</h2>
<ul>
<li>assign_ri_from_comment was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/assign_ri_from_comment/6975af39ba79">6975af39ba79</a></li>
<li>matchms_add_key was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_add_key/a14e7fe18387">a14e7fe18387</a></li>
<li>matchms_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/165f303aa2d1">165f303aa2d1</a></li>
<li>matchms_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/1f063ff015b9">1f063ff015b9</a></li>
<li>matchms_filtering was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/3370f5b08d19">3370f5b08d19</a></li>
<li>matchms_fingerprint_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/1d3ee4f9f63d">1d3ee4f9f63d</a></li>
<li>matchms_fingerprint_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/99da744050b7">99da744050b7</a></li>
<li>matchms_formatter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/23d4bc72c505">23d4bc72c505</a></li>
<li>matchms_formatter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/9287136a396a">9287136a396a</a></li>
<li>matchms_metadata_export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/786df5cf7dec">786df5cf7dec</a></li>
<li>matchms_metadata_match was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/7d171a8c71dc">7d171a8c71dc</a></li>
<li>matchms_metadata_merge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/0c9f977e8d75">0c9f977e8d75</a></li>
<li>matchms_networking was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/2200e9b7a2b3">2200e9b7a2b3</a></li>
<li>matchms_networking was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/7985c63a880c">7985c63a880c</a></li>
<li>matchms_remove_key was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_key/8a8a58be3929">8a8a58be3929</a></li>
<li>matchms_spectral_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/44e7027714d7">44e7027714d7</a></li>
<li>matchms_spectral_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/67f65bcc94bf">67f65bcc94bf</a></li>
<li>matchms_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/114617e6ad33">114617e6ad33</a></li>
<li>matchms_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/986ecfc55ed9">986ecfc55ed9</a></li>
<li>matchms_subsetting was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/4ef214cf07c1">4ef214cf07c1</a></li>
<li>matchms_subsetting was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/9231f7bee46d">9231f7bee46d</a></li>
<li>use_theoretical_mz_annotations was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/use_theoretical_mz_annotations/e0cac9994a72">e0cac9994a72</a></li>
</ul>
<h2 id="chemicaltoolbox">ChemicalToolBox</h2>
<ul>
<li>qcxms_getres was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/qcxms_getres/ef51824f6d04">ef51824f6d04</a></li>
<li>qcxms_neutral_run was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/qcxms_neutral_run/0d9d72ef658f">0d9d72ef658f</a></li>
<li>qcxms_production_run was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/qcxms_production_run/b566b27247f7">b566b27247f7</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623">b883cbea5623</a></li>
</ul>
<h2 id="get-data">Get Data</h2>
<ul>
<li>unipept was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/unipept/21a560af5913">21a560af5913</a></li>
<li>sra_tools was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/sra_tools/1ec814014652">1ec814014652</a></li>
</ul>
<h2 id="metagenomic-analysis">Metagenomic Analysis</h2>
<ul>
<li>kraken was updated to <a href="https://toolshed.g2.bx.psu.edu/view/devteam/kraken/766d5f63b0f4">766d5f63b0f4</a></li>
<li>kraken_filter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/devteam/kraken_filter/67236d921e83">67236d921e83</a></li>
<li>kraken_report was updated to <a href="https://toolshed.g2.bx.psu.edu/view/devteam/kraken_report/1c677354ab18">1c677354ab18</a></li>
<li>kraken_translate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/devteam/kraken_translate/8cebdc74a48f">8cebdc74a48f</a></li>
<li>ampvis2_alpha_diversity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_alpha_diversity/52fbe4eb7ce7">52fbe4eb7ce7</a></li>
<li>ampvis2_boxplot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_boxplot/b4c6f8741989">b4c6f8741989</a></li>
<li>ampvis2_core was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_core/943c2ae9594a">943c2ae9594a</a></li>
<li>ampvis2_export_fasta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_export_fasta/c1fcdec30d69">c1fcdec30d69</a></li>
<li>ampvis2_frequency was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_frequency/ac9564dcdb99">ac9564dcdb99</a></li>
<li>ampvis2_heatmap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_heatmap/14695ae019be">14695ae019be</a></li>
<li>ampvis2_load was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_load/3481feabc54e">3481feabc54e</a></li>
<li>ampvis2_merge_ampvis2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_merge_ampvis2/d8334b328618">d8334b328618</a></li>
<li>ampvis2_mergereplicates was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_mergereplicates/63ed7a3cd45f">63ed7a3cd45f</a></li>
<li>ampvis2_octave was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_octave/4289db874e3c">4289db874e3c</a></li>
<li>ampvis2_ordinate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_ordinate/811df76f4f26">811df76f4f26</a></li>
<li>ampvis2_otu_network was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_otu_network/7e6f33f40312">7e6f33f40312</a></li>
<li>ampvis2_rankabundance was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rankabundance/d02f4a87eb55">d02f4a87eb55</a></li>
<li>ampvis2_rarecurve was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rarecurve/2e69edaaa834">2e69edaaa834</a></li>
<li>ampvis2_setmetadata was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_setmetadata/b8fd62239d7e">b8fd62239d7e</a></li>
<li>ampvis2_subset_samples was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_samples/c8bfb923d7d4">c8bfb923d7d4</a></li>
<li>ampvis2_subset_taxa was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_taxa/e2df49914652">e2df49914652</a></li>
<li>ampvis2_timeseries was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_timeseries/9de032723f5b">9de032723f5b</a></li>
<li>ampvis2_venn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_venn/338f47a9e25c">338f47a9e25c</a></li>
<li>kraken_biom was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/kraken_biom/b582a159bb10">b582a159bb10</a></li>
<li>kraken_taxonomy_report was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/kraken_taxonomy_report/bfae8da6082c">bfae8da6082c</a></li>
<li>maaslin2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/maaslin2/ef2cace85809">ef2cace85809</a></li>
<li>mapseq was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mapseq/f1d1dafc836d">f1d1dafc836d</a></li>
<li>nonpareil was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/nonpareil/cef64c36c89e">cef64c36c89e</a></li>
<li>phyloseq_from_dada2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_dada2/87064cb77a52">87064cb77a52</a></li>
<li>phyloseq_plot_ordination was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_ordination/dfe800a3faaf">dfe800a3faaf</a></li>
<li>phyloseq_plot_richness was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_richness/fb7c4bbe8994">fb7c4bbe8994</a></li>
<li>plasflow was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/plasflow/1d2a91ab28b7">1d2a91ab28b7</a></li>
<li>scoary was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/scoary/77d50ec2bcf2">77d50ec2bcf2</a></li>
<li>seqsero2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/seqsero2/5a9a6074d99b">5a9a6074d99b</a></li>
<li>vegan_diversity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/vegan_diversity/a1b80a746054">a1b80a746054</a></li>
<li>vegan_fisher_alpha was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/vegan_fisher_alpha/0148e5cf20b2">0148e5cf20b2</a></li>
<li>vegan_rarefaction was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/vegan_rarefaction/af1211ed6c8e">af1211ed6c8e</a></li>
</ul>
<h2 id="fastafastq">FASTA/FASTQ</h2>
<ul>
<li>lighter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/lighter/89b453176d05">89b453176d05</a></li>
<li>ncbi_fcs_gx was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ncbi_fcs_gx/3cdb96f2855d">3cdb96f2855d</a></li>
</ul>
<h2 id="annotation">Annotation</h2>
<ul>
<li>compleasm was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/compleasm/79413aecc398">79413aecc398</a></li>
<li>kofamscan was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/kofamscan/95c71179a054">95c71179a054</a></li>
<li>krocus was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/krocus/6a97c3a857d2">6a97c3a857d2</a></li>
<li>legsta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/legsta/0411fca1d681">0411fca1d681</a></li>
<li>lorikeet_spoligotype was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/lorikeet_spoligotype/da22667725c7">da22667725c7</a></li>
<li>miniprot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/miniprot/00b22efdd100">00b22efdd100</a></li>
<li>miniprot_index was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/miniprot_index/9e2772125405">9e2772125405</a></li>
<li>mirmachine was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mirmachine/f2e87c81497d">f2e87c81497d</a></li>
<li>omark was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/omark/9607b69326e1">9607b69326e1</a></li>
<li>prodigal was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/prodigal/91791b6ecd38">91791b6ecd38</a></li>
<li>tbprofiler was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/tbprofiler/d03af1c7002c">d03af1c7002c</a></li>
<li>transtermhp was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/transtermhp/42b38f6d9f68">42b38f6d9f68</a></li>
<li>tsebra was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/tsebra/f124679db9df">f124679db9df</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>msstats was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/msstats/de7593c29499">de7593c29499</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6">40cc19c0dbd6</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834">fc36cfd19834</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
</ul>
<h2 id="convert-formats">Convert Formats</h2>
<ul>
<li>mz_to_sqlite was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/mz_to_sqlite/705821bf30d2">705821bf30d2</a></li>
<li>bam2fastx was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bam2fastx/61a6b93ee6e1">61a6b93ee6e1</a></li>
<li>biom_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/biom_convert/d4d4e9febf5c">d4d4e9febf5c</a></li>
</ul>
<h2 id="machine-learning">Machine Learning</h2>
<ul>
<li>biomodels_biomd0000001066 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/biomodels_biomd0000001066/1748c5d74df5">1748c5d74df5</a></li>
</ul>
<h2 id="mapping">Mapping</h2>
<ul>
<li>graphmap_align was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/graphmap_align/1c6c961851de">1c6c961851de</a></li>
<li>graphmap_overlap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/graphmap_overlap/815251b32ccc">815251b32ccc</a></li>
</ul>
<h2 id="imaging">Imaging</h2>
<ul>
<li>points2binaryimage was updated to <a href="https://toolshed.g2.bx.psu.edu/view/imgteam/points2binaryimage/2ad6350df85b">2ad6350df85b</a></li>
</ul>
<h2 id="assembly">Assembly</h2>
<ul>
<li>miniasm was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/miniasm/b799a615995d">b799a615995d</a></li>
</ul>
<h2 id="genome-editing">Genome editing</h2>
<ul>
<li>crispr_studio was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/crispr_studio/a227c05e0a55">a227c05e0a55</a></li>
<li>sonneityping was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/sonneityping/0ac12c344bfa">0ac12c344bfa</a></li>
</ul>
<h2 id="nanopore">Nanopore</h2>
<ul>
<li>nanopolishcomp_eventaligncollapse was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/nanopolishcomp_eventaligncollapse/74d7b06c2b92">74d7b06c2b92</a></li>
<li>nanopolishcomp_freqmethcalculate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/nanopolishcomp_freqmethcalculate/f08dfdcefdbd">f08dfdcefdbd</a></li>
<li>pycoqc was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pycoqc/3a2f2e24c37e">3a2f2e24c37e</a></li>
<li>pycoqc was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pycoqc/fae03f3d4bf7">fae03f3d4bf7</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
<li>nextalign was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/nextalign/aadc5d8099e2">aadc5d8099e2</a></li>
<li>nextclade was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/nextclade/4f6349228462">4f6349228462</a></li>
</ul>
<h2 id="sambam">SAM/BAM</h2>
<ul>
<li>bamtools was updated to <a href="https://toolshed.g2.bx.psu.edu/view/devteam/bamtools/970e6333f07e">970e6333f07e</a></li>
<li>bamtools_filter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/devteam/bamtools_filter/993b19f20c76">993b19f20c76</a></li>
<li>bamtools_split_mapped was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bamtools_split_mapped/fa7b5520ae53">fa7b5520ae53</a></li>
<li>bamtools_split_paired was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bamtools_split_paired/75d5afa09972">75d5afa09972</a></li>
<li>bamtools_split_ref was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bamtools_split_ref/9b8feb118f9e">9b8feb118f9e</a></li>
<li>bamtools_split_tag was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bamtools_split_tag/e9b9c489aacc">e9b9c489aacc</a></li>
</ul>
<h2 id="single-cell">Single-cell</h2>
<ul>
<li>scanpy_cluster_reduce_dimension was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_cluster_reduce_dimension/6f83f8fd381f">6f83f8fd381f</a></li>
<li>scanpy_filter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_filter/277313130da5">277313130da5</a></li>
<li>scanpy_inspect was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_inspect/5c3ebe2adc77">5c3ebe2adc77</a></li>
<li>scanpy_normalize was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_normalize/7b9fafe32c86">7b9fafe32c86</a></li>
<li>scanpy_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_plot/6f5349dd5c49">6f5349dd5c49</a></li>
<li>scanpy_remove_confounders was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_remove_confounders/d18e7a6e5cd4">d18e7a6e5cd4</a></li>
</ul>
<h2 id="variant-calling">Variant Calling</h2>
<ul>
<li>cnv_phenopacket was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cnv_phenopacket/61aad58c7b2d">61aad58c7b2d</a></li>
<li>cnv_vcf2json was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cnv_vcf2json/c8caf812d33b">c8caf812d33b</a></li>
</ul>
<h2 id="virology">Virology</h2>
<ul>
<li>ivar_consensus was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ivar_consensus/40737febe339">40737febe339</a></li>
<li>ivar_filtervariants was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ivar_filtervariants/096a5b0210cc">096a5b0210cc</a></li>
<li>ivar_filtervariants was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ivar_filtervariants/618297d23022">618297d23022</a></li>
<li>ivar_removereads was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ivar_removereads/a1c2aecd7a0d">a1c2aecd7a0d</a></li>
<li>ivar_trim was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ivar_trim/28e4bcbc86e7">28e4bcbc86e7</a></li>
<li>ivar_trim was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ivar_trim/86a20ae274fc">86a20ae274fc</a></li>
<li>ivar_variants was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ivar_variants/194e3ceee923">194e3ceee923</a></li>
<li>read_it_and_keep was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/read_it_and_keep/fa7086274673">fa7086274673</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
</ul>
<h2 id="hca_sc_label_analysis_tools">hca_sc_label_analysis_tools</h2>
<ul>
<li>decoupler_pseudobulk was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/decoupler_pseudobulk/130e25d3ce92">130e25d3ce92</a></li>
<li>decoupler_pseudobulk was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/decoupler_pseudobulk/893ff9213a34">893ff9213a34</a></li>
</ul>On 2024-03-17, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #436UseGalaxy.eu Tool Updates for 2024-03-102024-03-10T00:00:00+01:002024-03-10T00:00:00+01:00https://galaxyproject.eu/posts/2024/03/10/tool-update<p>On 2024-03-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#435/">Jenkins Build #435</a></p>
<h2 id="statistics">Statistics</h2>
<ul>
<li>scipy_sparse was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/scipy_sparse/92e09b827300">92e09b827300</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623">b883cbea5623</a></li>
</ul>
<h2 id="get-data">Get Data</h2>
<ul>
<li>ncbi_datasets was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ncbi_datasets/198c75abbf55">198c75abbf55</a></li>
<li>sra_tools was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/sra_tools/de0f7e0a3896">de0f7e0a3896</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
<li>proteinortho was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho/54fb02338510">54fb02338510</a></li>
<li>proteinortho_grab_proteins was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho_grab_proteins/4ab23324f633">4ab23324f633</a></li>
<li>proteinortho_summary was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho_summary/fcd2b87f1772">fcd2b87f1772</a></li>
</ul>
<h2 id="imaging">Imaging</h2>
<ul>
<li>image_math was updated to <a href="https://toolshed.g2.bx.psu.edu/view/imgteam/image_math/33b2ca53a566">33b2ca53a566</a></li>
<li>morphological_operations was updated to <a href="https://toolshed.g2.bx.psu.edu/view/imgteam/morphological_operations/f10112b317a1">f10112b317a1</a></li>
<li>voronoi_tesselation was updated to <a href="https://toolshed.g2.bx.psu.edu/view/imgteam/voronoi_tesselation/8b74843c136e">8b74843c136e</a></li>
</ul>
<h2 id="annotation">Annotation</h2>
<ul>
<li>hamronize_summarize was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hamronize_summarize/88045b4d5597">88045b4d5597</a></li>
<li>hamronize_tool was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hamronize_tool/cbfa52c8f1ef">cbfa52c8f1ef</a></li>
<li>omark was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/omark/2eebe7f521f3">2eebe7f521f3</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
<li>data_manager_omamer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_omamer/57db282ca204">57db282ca204</a></li>
</ul>
<h2 id="nanopore">Nanopore</h2>
<ul>
<li>nanoplot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/nanoplot/7b379e98b9a9">7b379e98b9a9</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>ete was updated to <a href="https://toolshed.g2.bx.psu.edu/view/earlhaminst/ete/d40b9a7debe5">d40b9a7debe5</a></li>
<li>treebest_best was updated to <a href="https://toolshed.g2.bx.psu.edu/view/earlhaminst/treebest_best/bc049ecd9907">bc049ecd9907</a></li>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="picard">Picard</h2>
<ul>
<li>picard was updated to <a href="https://toolshed.g2.bx.psu.edu/view/devteam/picard/3f254c5ced1d">3f254c5ced1d</a></li>
</ul>
<h2 id="variant-calling">Variant Calling</h2>
<ul>
<li>deepvariant was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/deepvariant/63b68fe4af85">63b68fe4af85</a></li>
</ul>
<h2 id="metabolomics">Metabolomics</h2>
<ul>
<li>dimet_abundance_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_abundance_plot/422207876644">422207876644</a></li>
<li>dimet_bivariate_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_bivariate_analysis/265543358207">265543358207</a></li>
<li>dimet_differential_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_analysis/8579d74e740b">8579d74e740b</a></li>
<li>dimet_differential_multigroup_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_multigroup_analysis/7897a5cadcf5">7897a5cadcf5</a></li>
<li>dimet_enrichment_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_enrichment_plot/c6879530205c">c6879530205c</a></li>
<li>dimet_isotopologues_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_isotopologues_plot/b761f919732d">b761f919732d</a></li>
<li>dimet_metabologram was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_metabologram/b6e621c83f94">b6e621c83f94</a></li>
<li>dimet_pca_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_analysis/04c26050d2d0">04c26050d2d0</a></li>
<li>dimet_pca_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_plot/b6faa1142f83">b6faa1142f83</a></li>
<li>dimet_timecourse_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_timecourse_analysis/b856fcb1346e">b856fcb1346e</a></li>
</ul>On 2024-03-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #435UseGalaxy.eu Tool Updates for 2024-03-042024-03-04T00:00:00+01:002024-03-04T00:00:00+01:00https://galaxyproject.eu/posts/2024/03/04/tool-update<p>On 2024-03-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#434/">Jenkins Build #434</a></p>
<h2 id="text-manipulation">Text Manipulation</h2>
<ul>
<li>text_processing was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/text_processing/12615d397df7">12615d397df7</a></li>
</ul>
<h2 id="graphdisplay-data">Graph/Display Data</h2>
<ul>
<li>ggplot2_heatmap2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ggplot2_heatmap2/374e9062d874">374e9062d874</a></li>
</ul>
<h2 id="get-data">Get Data</h2>
<ul>
<li>iabiodiv_smartbiodiv_med_environ was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/iabiodiv_smartbiodiv_med_environ/b79faea33a8a">b79faea33a8a</a></li>
</ul>
<h2 id="metabolomics">Metabolomics</h2>
<ul>
<li>matchms_add_key was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_add_key/d88b20d27caa">d88b20d27caa</a></li>
<li>matchms_metadata_export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/82aaf2631875">82aaf2631875</a></li>
<li>matchms_metadata_match was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/43d40415654c">43d40415654c</a></li>
<li>matchms_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/14a792c45c0b">14a792c45c0b</a></li>
<li>matchms_subsetting was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/d8525504d332">d8525504d332</a></li>
<li>riassigner was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/riassigner/79818ce5a8bf">79818ce5a8bf</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623">b883cbea5623</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6">40cc19c0dbd6</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834">fc36cfd19834</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
</ul>
<h2 id="annotation">Annotation</h2>
<ul>
<li>tapscan was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/tapscan/c4f865bd101a">c4f865bd101a</a></li>
<li>helixer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/genouest/helixer/7c1dc010a819">7c1dc010a819</a></li>
<li>genenotebook_genenotebook_build was updated to <a href="https://toolshed.g2.bx.psu.edu/view/gga/genenotebook_genenotebook_build/29eeddd8ea62">29eeddd8ea62</a></li>
<li>annotatemyids was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/annotatemyids/a79ee60b6926">a79ee60b6926</a></li>
<li>hmmer_alimask was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_alimask/e3e5f208e93c">e3e5f208e93c</a></li>
<li>hmmer_hmmalign was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_hmmalign/71863d3bf721">71863d3bf721</a></li>
<li>hmmer_hmmbuild was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_hmmbuild/4b996c837ec8">4b996c837ec8</a></li>
<li>hmmer_hmmconvert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_hmmconvert/a9dace1a1e36">a9dace1a1e36</a></li>
<li>hmmer_hmmemit was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_hmmemit/be03abdc6451">be03abdc6451</a></li>
<li>hmmer_hmmfetch was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_hmmfetch/34b09461bf87">34b09461bf87</a></li>
<li>hmmer_hmmscan was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_hmmscan/4a54e4c9188b">4a54e4c9188b</a></li>
<li>hmmer_hmmsearch was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_hmmsearch/df7a52791be9">df7a52791be9</a></li>
<li>hmmer_jackhmmer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_jackhmmer/9fdeca68a6b5">9fdeca68a6b5</a></li>
<li>hmmer_nhmmer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_nhmmer/54b92ae4f75b">54b92ae4f75b</a></li>
<li>hmmer_nhmmscan was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_nhmmscan/fb1305d0d1c6">fb1305d0d1c6</a></li>
<li>hmmer_phmmer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hmmer_phmmer/37bcc9fb0bb1">37bcc9fb0bb1</a></li>
<li>integron_finder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/integron_finder/392f100eebcd">392f100eebcd</a></li>
<li>multigsea was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/multigsea/e48b10ce08b8">e48b10ce08b8</a></li>
<li>omark was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/omark/ce13b4c42256">ce13b4c42256</a></li>
<li>tsebra was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/tsebra/66310cfc17dd">66310cfc17dd</a></li>
</ul>
<h2 id="imaging">Imaging</h2>
<ul>
<li>cellpose was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/cellpose/030bfe6065d9">030bfe6065d9</a></li>
<li>cell_intensity_processing was updated to <a href="https://toolshed.g2.bx.psu.edu/view/goeckslab/cell_intensity_processing/7f93f472a242">7f93f472a242</a></li>
<li>gate_finder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/goeckslab/gate_finder/8097f9124f87">8097f9124f87</a></li>
<li>rename_tiff_channels was updated to <a href="https://toolshed.g2.bx.psu.edu/view/goeckslab/rename_tiff_channels/d2c59a1ac0c4">d2c59a1ac0c4</a></li>
<li>squidpy was updated to <a href="https://toolshed.g2.bx.psu.edu/view/goeckslab/squidpy/bad34051dc8a">bad34051dc8a</a></li>
<li>vitessce_spatial was updated to <a href="https://toolshed.g2.bx.psu.edu/view/goeckslab/vitessce_spatial/4bf852448b5d">4bf852448b5d</a></li>
<li>bioformats2raw was updated to <a href="https://toolshed.g2.bx.psu.edu/view/imgteam/bioformats2raw/1b3e7d53cec6">1b3e7d53cec6</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
<li>data_manager_omamer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_omamer/e1502e4f8725">e1502e4f8725</a></li>
</ul>
<h2 id="assembly">Assembly</h2>
<ul>
<li>abyss was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/abyss/0124fce4654a">0124fce4654a</a></li>
</ul>
<h2 id="convert-formats">Convert Formats</h2>
<ul>
<li>bioext_bam2msa was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bioext_bam2msa/27673f5b5343">27673f5b5343</a></li>
</ul>
<h2 id="fastafastq">FASTA/FASTQ</h2>
<ul>
<li>rasusa was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/rasusa/c8f1cd6c1fbf">c8f1cd6c1fbf</a></li>
</ul>
<h2 id="mapping">Mapping</h2>
<ul>
<li>bowtie2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/devteam/bowtie2/0d4acadabb04">0d4acadabb04</a></li>
<li>bioext_bealign was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bioext_bealign/8a7462c0ac14">8a7462c0ac14</a></li>
<li>hisat2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hisat2/0c16cad5e03b">0c16cad5e03b</a></li>
<li>pbmm2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pbmm2/55b7b257e12f">55b7b257e12f</a></li>
</ul>
<h2 id="metagenomic-analysis">Metagenomic Analysis</h2>
<ul>
<li>ampvis2_alpha_diversity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_alpha_diversity/03bc6f6e667b">03bc6f6e667b</a></li>
<li>ampvis2_boxplot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_boxplot/6eae290d762b">6eae290d762b</a></li>
<li>ampvis2_core was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_core/0d30cb9b14cc">0d30cb9b14cc</a></li>
<li>ampvis2_export_fasta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_export_fasta/45ea720bba74">45ea720bba74</a></li>
<li>ampvis2_frequency was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_frequency/cdba4eab5a54">cdba4eab5a54</a></li>
<li>ampvis2_heatmap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_heatmap/a2d4da20749a">a2d4da20749a</a></li>
<li>ampvis2_load was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_load/932d7573a561">932d7573a561</a></li>
<li>ampvis2_merge_ampvis2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_merge_ampvis2/78ff575ef835">78ff575ef835</a></li>
<li>ampvis2_mergereplicates was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_mergereplicates/9bb9bf720e68">9bb9bf720e68</a></li>
<li>ampvis2_octave was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_octave/ffbccf6fe7fb">ffbccf6fe7fb</a></li>
<li>ampvis2_ordinate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_ordinate/75e025c9bc10">75e025c9bc10</a></li>
<li>ampvis2_otu_network was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_otu_network/b8f0ee2915d1">b8f0ee2915d1</a></li>
<li>ampvis2_rankabundance was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rankabundance/28b63a7e22ca">28b63a7e22ca</a></li>
<li>ampvis2_rarecurve was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rarecurve/cad82070c2df">cad82070c2df</a></li>
<li>ampvis2_setmetadata was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_setmetadata/0d18b4bb08cb">0d18b4bb08cb</a></li>
<li>ampvis2_subset_samples was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_samples/543c11bd472a">543c11bd472a</a></li>
<li>ampvis2_subset_taxa was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_taxa/512e102a19ad">512e102a19ad</a></li>
<li>ampvis2_timeseries was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_timeseries/ceda8519e440">ceda8519e440</a></li>
<li>ampvis2_venn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_venn/b966b12ffe36">b966b12ffe36</a></li>
<li>coverm_contig was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/coverm_contig/28d740f2c0b0">28d740f2c0b0</a></li>
<li>coverm_genome was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/coverm_genome/73b667038f46">73b667038f46</a></li>
<li>das_tool was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/das_tool/7d997332582e">7d997332582e</a></li>
<li>fasta_to_contig2bin was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/fasta_to_contig2bin/ce6c26db9701">ce6c26db9701</a></li>
<li>recentrifuge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/recentrifuge/76bf12b928f4">76bf12b928f4</a></li>
</ul>
<h2 id="peak-calling">Peak Calling</h2>
<ul>
<li>peakzilla was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/peakzilla/8badcbe5792c">8badcbe5792c</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="sambam">SAM/BAM</h2>
<ul>
<li>mosdepth was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mosdepth/5cd5d0947354">5cd5d0947354</a></li>
</ul>
<h2 id="variant-calling">Variant Calling</h2>
<ul>
<li>manta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/artbio/manta/555971edd46e">555971edd46e</a></li>
<li>vcfanno was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/vcfanno/4f3c5e634679">4f3c5e634679</a></li>
</ul>
<h2 id="virology">Virology</h2>
<ul>
<li>lineagespot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/lineagespot/99494998688a">99494998688a</a></li>
</ul>
<h2 id="hca_sc_scanpy_tools">hca_sc_scanpy_tools</h2>
<ul>
<li>anndata_ops was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/anndata_ops/a4774b7b2e85">a4774b7b2e85</a></li>
<li>scanpy_compute_graph was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_compute_graph/22bd5861706d">22bd5861706d</a></li>
<li>scanpy_filter_cells was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_filter_cells/bf1e0bdec1db">bf1e0bdec1db</a></li>
<li>scanpy_filter_genes was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_filter_genes/cc64914b0cf4">cc64914b0cf4</a></li>
<li>scanpy_find_cluster was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_cluster/36735850e461">36735850e461</a></li>
<li>scanpy_find_markers was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_markers/d8f5224005bb">d8f5224005bb</a></li>
<li>scanpy_find_variable_genes was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_variable_genes/2bc42a6f092b">2bc42a6f092b</a></li>
<li>scanpy_integrate_bbknn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_bbknn/c9da9192eee5">c9da9192eee5</a></li>
<li>scanpy_integrate_combat was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_combat/3c47bc560688">3c47bc560688</a></li>
<li>scanpy_integrate_harmony was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_harmony/c354af93f567">c354af93f567</a></li>
<li>scanpy_integrate_mnn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_mnn/ff6decc0f432">ff6decc0f432</a></li>
<li>scanpy_multiplet_scrublet was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_multiplet_scrublet/2f9517a24c73">2f9517a24c73</a></li>
<li>scanpy_normalise_data was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_normalise_data/3027cb62adbd">3027cb62adbd</a></li>
<li>scanpy_parameter_iterator was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_parameter_iterator/73d43034c860">73d43034c860</a></li>
<li>scanpy_plot_embed was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_plot_embed/7d5c97823f8b">7d5c97823f8b</a></li>
<li>scanpy_plot_scrublet was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_plot_scrublet/6f5509cf3176">6f5509cf3176</a></li>
<li>scanpy_plot_trajectory was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_plot_trajectory/cb1992d1804b">cb1992d1804b</a></li>
<li>scanpy_read_10x was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_read_10x/078aa23c9374">078aa23c9374</a></li>
<li>scanpy_regress_variable was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_regress_variable/0bab2ae44e7a">0bab2ae44e7a</a></li>
<li>scanpy_run_diffmap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_diffmap/79cc06a557b0">79cc06a557b0</a></li>
<li>scanpy_run_dpt was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_dpt/03921aa8b29c">03921aa8b29c</a></li>
<li>scanpy_run_fdg was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_fdg/be019b069e31">be019b069e31</a></li>
<li>scanpy_run_paga was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_paga/b2768cae00a1">b2768cae00a1</a></li>
<li>scanpy_run_pca was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_pca/4428dba93375">4428dba93375</a></li>
<li>scanpy_run_tsne was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_tsne/abdb61e4afa3">abdb61e4afa3</a></li>
<li>scanpy_run_umap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_umap/ea91cfd0444e">ea91cfd0444e</a></li>
<li>scanpy_scale_data was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_scale_data/4cc9362782b4">4cc9362782b4</a></li>
</ul>
<h2 id="hca_sc_seurat_tools">hca_sc_seurat_tools</h2>
<ul>
<li>seurat_dim_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_dim_plot/64174ac50d78">64174ac50d78</a></li>
<li>seurat_export_cellbrowser was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_export_cellbrowser/36221da750e8">36221da750e8</a></li>
<li>seurat_filter_cells was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_filter_cells/cd9f564bd63f">cd9f564bd63f</a></li>
<li>seurat_find_clusters was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_find_clusters/d541e9e62beb">d541e9e62beb</a></li>
<li>seurat_find_markers was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_find_markers/07fc9f4841b3">07fc9f4841b3</a></li>
<li>seurat_find_neighbours was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_find_neighbours/ba897c57bdd9">ba897c57bdd9</a></li>
<li>seurat_find_variable_genes was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_find_variable_genes/948fc0276b4f">948fc0276b4f</a></li>
<li>seurat_normalise_data was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_normalise_data/3f49bc9c9213">3f49bc9c9213</a></li>
<li>seurat_read10x was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_read10x/f5db0e853f57">f5db0e853f57</a></li>
<li>seurat_run_pca was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_run_pca/8ded486b0014">8ded486b0014</a></li>
<li>seurat_run_tsne was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_run_tsne/0db997e4a81d">0db997e4a81d</a></li>
<li>seurat_scale_data was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/seurat_scale_data/5e9ba303f9e1">5e9ba303f9e1</a></li>
</ul>
<h2 id="spatial-omics">Spatial Omics</h2>
<ul>
<li>mesmer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/goeckslab/mesmer/2675ff99a53b">2675ff99a53b</a></li>
</ul>On 2024-03-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #434UseGalaxy.eu Tool Updates for 2024-02-252024-02-25T00:00:00+01:002024-02-25T00:00:00+01:00https://galaxyproject.eu/posts/2024/02/25/tool-update<p>On 2024-02-25, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#433/">Jenkins Build #433</a></p>
<h2 id="metabolomics">Metabolomics</h2>
<ul>
<li>matchms_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/165f303aa2d1">165f303aa2d1</a></li>
<li>matchms_filtering was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/da15e8ea3b28">da15e8ea3b28</a></li>
<li>matchms_fingerprint_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/1d3ee4f9f63d">1d3ee4f9f63d</a></li>
<li>matchms_formatter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/23d4bc72c505">23d4bc72c505</a></li>
<li>matchms_metadata_merge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/3a37748f6c95">3a37748f6c95</a></li>
<li>matchms_networking was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/2200e9b7a2b3">2200e9b7a2b3</a></li>
<li>matchms_remove_key was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_key/0a64e2bcce96">0a64e2bcce96</a></li>
<li>matchms_spectral_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/44e7027714d7">44e7027714d7</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623">b883cbea5623</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
</ul>On 2024-02-25, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #433UseGalaxy.eu Tool Updates for 2024-02-182024-02-18T00:00:00+01:002024-02-18T00:00:00+01:00https://galaxyproject.eu/posts/2024/02/18/tool-update<p>On 2024-02-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#432/">Jenkins Build #432</a></p>
<h2 id="data-and-metadata-management">Data and Metadata Management</h2>
<ul>
<li>taxo_cov_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/taxo_cov_template/2af7401f13e0">2af7401f13e0</a></li>
<li>taxo_cov_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/taxo_cov_template/9507334a3303">9507334a3303</a></li>
</ul>
<h2 id="get-data">Get Data</h2>
<ul>
<li>iabiodiv_smartbiodiv_med_environ was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/iabiodiv_smartbiodiv_med_environ/f82f266381be">f82f266381be</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__alignment__mafft was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__alignment__mafft/a0a48c15c573">a0a48c15c573</a></li>
<li>qiime2__alignment__mafft_add was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__alignment__mafft_add/442d1a046fa6">442d1a046fa6</a></li>
<li>qiime2__alignment__mask was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__alignment__mask/e8bee857dc0d">e8bee857dc0d</a></li>
<li>qiime2__composition__add_pseudocount was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__composition__add_pseudocount/f92a9f40c7e1">f92a9f40c7e1</a></li>
<li>qiime2__composition__ancom was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__composition__ancom/e3a9e7cb7b77">e3a9e7cb7b77</a></li>
<li>qiime2__composition__ancombc was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__composition__ancombc/fe99db171ce5">fe99db171ce5</a></li>
<li>qiime2__composition__tabulate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__composition__tabulate/54caf7f5c410">54caf7f5c410</a></li>
<li>qiime2__cutadapt__demux_paired was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__cutadapt__demux_paired/c6a8822e19f2">c6a8822e19f2</a></li>
<li>qiime2__cutadapt__demux_single was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__cutadapt__demux_single/d8851a5b9360">d8851a5b9360</a></li>
<li>qiime2__cutadapt__trim_paired was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__cutadapt__trim_paired/b7fc07bacdb2">b7fc07bacdb2</a></li>
<li>qiime2__cutadapt__trim_single was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__cutadapt__trim_single/42cd76be2cbf">42cd76be2cbf</a></li>
<li>qiime2__dada2__denoise_ccs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__dada2__denoise_ccs/d777f76179b6">d777f76179b6</a></li>
<li>qiime2__dada2__denoise_paired was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__dada2__denoise_paired/06bacd08bb47">06bacd08bb47</a></li>
<li>qiime2__dada2__denoise_pyro was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__dada2__denoise_pyro/377a0bd6edd4">377a0bd6edd4</a></li>
<li>qiime2__dada2__denoise_single was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__dada2__denoise_single/e7812ca89033">e7812ca89033</a></li>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
<li>qiime2__deblur__denoise_other was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_other/61ee71aacf1c">61ee71aacf1c</a></li>
<li>qiime2__deblur__visualize_stats was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__visualize_stats/0be892a57bfe">0be892a57bfe</a></li>
<li>qiime2__demux__emp_paired was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__demux__emp_paired/551e9187951c">551e9187951c</a></li>
<li>qiime2__demux__emp_single was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__demux__emp_single/75b07a996ac0">75b07a996ac0</a></li>
<li>qiime2__demux__filter_samples was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__demux__filter_samples/0e5d4dc5c23e">0e5d4dc5c23e</a></li>
<li>qiime2__demux__subsample_paired was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__demux__subsample_paired/f79287ee143e">f79287ee143e</a></li>
<li>qiime2__demux__subsample_single was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__demux__subsample_single/6c2c8696456f">6c2c8696456f</a></li>
<li>qiime2__demux__summarize was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__demux__summarize/d8a9f74f1a6d">d8a9f74f1a6d</a></li>
<li>qiime2__diversity__adonis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__adonis/82f9bc0feff3">82f9bc0feff3</a></li>
<li>qiime2__diversity__alpha was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__alpha/97e9b0b0aeae">97e9b0b0aeae</a></li>
<li>qiime2__diversity__alpha_correlation was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__alpha_correlation/5850f79a2b9f">5850f79a2b9f</a></li>
<li>qiime2__diversity__alpha_group_significance was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__alpha_group_significance/b7b5dc5a067b">b7b5dc5a067b</a></li>
<li>qiime2__diversity__alpha_phylogenetic was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__alpha_phylogenetic/fbf59d034371">fbf59d034371</a></li>
<li>qiime2__diversity__alpha_rarefaction was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__alpha_rarefaction/97cb20f77d50">97cb20f77d50</a></li>
<li>qiime2__diversity__beta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__beta/f5026cf3e156">f5026cf3e156</a></li>
<li>qiime2__diversity__beta_correlation was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__beta_correlation/ea97592533bb">ea97592533bb</a></li>
<li>qiime2__diversity__beta_group_significance was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__beta_group_significance/2df83b20af3f">2df83b20af3f</a></li>
<li>qiime2__diversity__beta_phylogenetic was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__beta_phylogenetic/26534bb91445">26534bb91445</a></li>
<li>qiime2__diversity__beta_rarefaction was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__beta_rarefaction/a5b96ea48d79">a5b96ea48d79</a></li>
<li>qiime2__diversity__bioenv was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__bioenv/0fb37e0413d6">0fb37e0413d6</a></li>
<li>qiime2__diversity__core_metrics was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__core_metrics/9602903a0fbd">9602903a0fbd</a></li>
<li>qiime2__diversity__core_metrics_phylogenetic was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__core_metrics_phylogenetic/9d29f6a334e5">9d29f6a334e5</a></li>
<li>qiime2__diversity__filter_distance_matrix was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__filter_distance_matrix/a53b321e6821">a53b321e6821</a></li>
<li>qiime2__diversity__mantel was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__mantel/196948449667">196948449667</a></li>
<li>qiime2__diversity__pcoa was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__pcoa/9f6dfa1155c4">9f6dfa1155c4</a></li>
<li>qiime2__diversity__pcoa_biplot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__pcoa_biplot/0b649d0fe617">0b649d0fe617</a></li>
<li>qiime2__diversity__procrustes_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__procrustes_analysis/fe144b0df710">fe144b0df710</a></li>
<li>qiime2__diversity__tsne was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__tsne/70d6cf1e8db0">70d6cf1e8db0</a></li>
<li>qiime2__diversity__umap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity__umap/21c17986c882">21c17986c882</a></li>
<li>qiime2__diversity_lib__alpha_passthrough was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__alpha_passthrough/98ae2621b590">98ae2621b590</a></li>
<li>qiime2__diversity_lib__beta_passthrough was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__beta_passthrough/38a55b074008">38a55b074008</a></li>
<li>qiime2__diversity_lib__beta_phylogenetic_meta_passthrough was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__beta_phylogenetic_meta_passthrough/1fe13f74d48a">1fe13f74d48a</a></li>
<li>qiime2__diversity_lib__beta_phylogenetic_passthrough was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__beta_phylogenetic_passthrough/fcbeb4dc4b81">fcbeb4dc4b81</a></li>
<li>qiime2__diversity_lib__bray_curtis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__bray_curtis/a1422e558f73">a1422e558f73</a></li>
<li>qiime2__diversity_lib__faith_pd was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__faith_pd/1142e83c6ae3">1142e83c6ae3</a></li>
<li>qiime2__diversity_lib__jaccard was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__jaccard/cf5fc36069f5">cf5fc36069f5</a></li>
<li>qiime2__diversity_lib__observed_features was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__observed_features/f740751c2439">f740751c2439</a></li>
<li>qiime2__diversity_lib__pielou_evenness was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__pielou_evenness/02d2141ff634">02d2141ff634</a></li>
<li>qiime2__diversity_lib__shannon_entropy was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__shannon_entropy/63d2b15ad101">63d2b15ad101</a></li>
<li>qiime2__diversity_lib__unweighted_unifrac was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__unweighted_unifrac/89423965acba">89423965acba</a></li>
<li>qiime2__diversity_lib__weighted_unifrac was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__diversity_lib__weighted_unifrac/0e3cc7583efc">0e3cc7583efc</a></li>
<li>qiime2__emperor__biplot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__emperor__biplot/c7d25d15856f">c7d25d15856f</a></li>
<li>qiime2__emperor__plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__emperor__plot/bc3a80afa08d">bc3a80afa08d</a></li>
<li>qiime2__emperor__procrustes_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__emperor__procrustes_plot/ec2a0e6d9baf">ec2a0e6d9baf</a></li>
<li>qiime2__feature_classifier__blast was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__blast/778c23c7bcf3">778c23c7bcf3</a></li>
<li>qiime2__feature_classifier__classify_consensus_blast was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__classify_consensus_blast/8f8f6d3d2304">8f8f6d3d2304</a></li>
<li>qiime2__feature_classifier__classify_consensus_vsearch was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__classify_consensus_vsearch/f82f2dbf0c04">f82f2dbf0c04</a></li>
<li>qiime2__feature_classifier__classify_hybrid_vsearch_sklearn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__classify_hybrid_vsearch_sklearn/abdf08c37b16">abdf08c37b16</a></li>
<li>qiime2__feature_classifier__classify_sklearn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__classify_sklearn/8aa82af30760">8aa82af30760</a></li>
<li>qiime2__feature_classifier__extract_reads was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__extract_reads/f3b56adfed5f">f3b56adfed5f</a></li>
<li>qiime2__feature_classifier__find_consensus_annotation was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__find_consensus_annotation/44246091f51f">44246091f51f</a></li>
<li>qiime2__feature_classifier__fit_classifier_naive_bayes was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__fit_classifier_naive_bayes/e0aebbd112a4">e0aebbd112a4</a></li>
<li>qiime2__feature_classifier__fit_classifier_sklearn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__fit_classifier_sklearn/651c5518951f">651c5518951f</a></li>
<li>qiime2__feature_classifier__vsearch_global was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_classifier__vsearch_global/c7bde9e4638d">c7bde9e4638d</a></li>
<li>qiime2__feature_table__core_features was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__core_features/13e8049936ee">13e8049936ee</a></li>
<li>qiime2__feature_table__filter_features was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__filter_features/b2df7f8e4a07">b2df7f8e4a07</a></li>
<li>qiime2__feature_table__filter_features_conditionally was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__filter_features_conditionally/78538c1b0993">78538c1b0993</a></li>
<li>qiime2__feature_table__filter_samples was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__filter_samples/540707a41f82">540707a41f82</a></li>
<li>qiime2__feature_table__filter_seqs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__filter_seqs/fd3798589de0">fd3798589de0</a></li>
<li>qiime2__feature_table__group was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__group/a27ceaf4cfc2">a27ceaf4cfc2</a></li>
<li>qiime2__feature_table__heatmap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__heatmap/c087d23bc043">c087d23bc043</a></li>
<li>qiime2__feature_table__merge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__merge/4c2751c8cc0d">4c2751c8cc0d</a></li>
<li>qiime2__feature_table__merge_seqs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__merge_seqs/9b95556df0f4">9b95556df0f4</a></li>
<li>qiime2__feature_table__merge_taxa was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__merge_taxa/a0c16a5250e4">a0c16a5250e4</a></li>
<li>qiime2__feature_table__presence_absence was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__presence_absence/aa33dec8fd70">aa33dec8fd70</a></li>
<li>qiime2__feature_table__rarefy was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__rarefy/77dce1a45822">77dce1a45822</a></li>
<li>qiime2__feature_table__relative_frequency was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__relative_frequency/580e1edc91d7">580e1edc91d7</a></li>
<li>qiime2__feature_table__rename_ids was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__rename_ids/a213286d3a38">a213286d3a38</a></li>
<li>qiime2__feature_table__subsample was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__subsample/649a75b79784">649a75b79784</a></li>
<li>qiime2__feature_table__summarize was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__summarize/365ce7a8e641">365ce7a8e641</a></li>
<li>qiime2__feature_table__tabulate_seqs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__tabulate_seqs/6d5cd7bcc0d0">6d5cd7bcc0d0</a></li>
<li>qiime2__feature_table__transpose was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__feature_table__transpose/70629120ae6c">70629120ae6c</a></li>
<li>qiime2__fragment_insertion__classify_otus_experimental was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__fragment_insertion__classify_otus_experimental/52cffcc84c14">52cffcc84c14</a></li>
<li>qiime2__fragment_insertion__filter_features was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__fragment_insertion__filter_features/2fe92e997c9a">2fe92e997c9a</a></li>
<li>qiime2__fragment_insertion__sepp was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__fragment_insertion__sepp/2fa85eae206e">2fa85eae206e</a></li>
<li>qiime2__gneiss__assign_ids was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__gneiss__assign_ids/3b50918cb7ec">3b50918cb7ec</a></li>
<li>qiime2__gneiss__correlation_clustering was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__gneiss__correlation_clustering/ca5a3976d699">ca5a3976d699</a></li>
<li>qiime2__gneiss__dendrogram_heatmap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__gneiss__dendrogram_heatmap/78bd3306c2d5">78bd3306c2d5</a></li>
<li>qiime2__gneiss__gradient_clustering was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__gneiss__gradient_clustering/76fb7a319e4f">76fb7a319e4f</a></li>
<li>qiime2__gneiss__ilr_hierarchical was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__gneiss__ilr_hierarchical/d0feca181800">d0feca181800</a></li>
<li>qiime2__gneiss__ilr_phylogenetic was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__gneiss__ilr_phylogenetic/742e0648a108">742e0648a108</a></li>
<li>qiime2__gneiss__ilr_phylogenetic_differential was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__gneiss__ilr_phylogenetic_differential/9dedc5b9b732">9dedc5b9b732</a></li>
<li>qiime2__gneiss__ilr_phylogenetic_ordination was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__gneiss__ilr_phylogenetic_ordination/f55de040b84c">f55de040b84c</a></li>
<li>qiime2__longitudinal__anova was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__anova/c32b6054c7d4">c32b6054c7d4</a></li>
<li>qiime2__longitudinal__feature_volatility was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__feature_volatility/ba818c170b06">ba818c170b06</a></li>
<li>qiime2__longitudinal__first_differences was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__first_differences/0019d6fb2df8">0019d6fb2df8</a></li>
<li>qiime2__longitudinal__first_distances was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__first_distances/607a63ad9e92">607a63ad9e92</a></li>
<li>qiime2__longitudinal__linear_mixed_effects was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__linear_mixed_effects/6253ca844c62">6253ca844c62</a></li>
<li>qiime2__longitudinal__maturity_index was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__maturity_index/65eb20bd61f1">65eb20bd61f1</a></li>
<li>qiime2__longitudinal__nmit was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__nmit/87412f607999">87412f607999</a></li>
<li>qiime2__longitudinal__pairwise_differences was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__pairwise_differences/b56e60e6c6e0">b56e60e6c6e0</a></li>
<li>qiime2__longitudinal__pairwise_distances was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__pairwise_distances/7799afde3e88">7799afde3e88</a></li>
<li>qiime2__longitudinal__plot_feature_volatility was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__plot_feature_volatility/11730a5ad81b">11730a5ad81b</a></li>
<li>qiime2__longitudinal__volatility was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__longitudinal__volatility/0e3d1b6523e2">0e3d1b6523e2</a></li>
<li>qiime2__metadata__distance_matrix was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__metadata__distance_matrix/8a43985a8f35">8a43985a8f35</a></li>
<li>qiime2__metadata__shuffle_groups was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__metadata__shuffle_groups/99fb88cf7a12">99fb88cf7a12</a></li>
<li>qiime2__metadata__tabulate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__metadata__tabulate/d6e1b976c373">d6e1b976c373</a></li>
<li>qiime2__phylogeny__align_to_tree_mafft_fasttree was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__align_to_tree_mafft_fasttree/2a9461620d5e">2a9461620d5e</a></li>
<li>qiime2__phylogeny__align_to_tree_mafft_iqtree was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__align_to_tree_mafft_iqtree/25daaf299138">25daaf299138</a></li>
<li>qiime2__phylogeny__align_to_tree_mafft_raxml was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__align_to_tree_mafft_raxml/9af151e32f0e">9af151e32f0e</a></li>
<li>qiime2__phylogeny__fasttree was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__fasttree/977e2ec8beb0">977e2ec8beb0</a></li>
<li>qiime2__phylogeny__filter_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__filter_table/05d29a3294de">05d29a3294de</a></li>
<li>qiime2__phylogeny__filter_tree was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__filter_tree/97716f0bd25b">97716f0bd25b</a></li>
<li>qiime2__phylogeny__iqtree was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__iqtree/2f898b3531ee">2f898b3531ee</a></li>
<li>qiime2__phylogeny__iqtree_ultrafast_bootstrap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__iqtree_ultrafast_bootstrap/adccaaf33660">adccaaf33660</a></li>
<li>qiime2__phylogeny__midpoint_root was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__midpoint_root/f4f3c556d4bd">f4f3c556d4bd</a></li>
<li>qiime2__phylogeny__raxml was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__raxml/2ff23f0ed1ba">2ff23f0ed1ba</a></li>
<li>qiime2__phylogeny__raxml_rapid_bootstrap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__raxml_rapid_bootstrap/1de3a5758b8c">1de3a5758b8c</a></li>
<li>qiime2__phylogeny__robinson_foulds was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__phylogeny__robinson_foulds/462ba4008e3c">462ba4008e3c</a></li>
<li>qiime2__quality_control__bowtie2_build was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__quality_control__bowtie2_build/ea81dc3914f8">ea81dc3914f8</a></li>
<li>qiime2__quality_control__evaluate_composition was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__quality_control__evaluate_composition/69c5dfffb92f">69c5dfffb92f</a></li>
<li>qiime2__quality_control__evaluate_seqs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__quality_control__evaluate_seqs/4bb288dbd04c">4bb288dbd04c</a></li>
<li>qiime2__quality_control__evaluate_taxonomy was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__quality_control__evaluate_taxonomy/13f0559220c2">13f0559220c2</a></li>
<li>qiime2__quality_control__exclude_seqs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__quality_control__exclude_seqs/cf4229cd0a05">cf4229cd0a05</a></li>
<li>qiime2__quality_control__filter_reads was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__quality_control__filter_reads/08d08d22d92b">08d08d22d92b</a></li>
<li>qiime2__quality_filter__q_score was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__quality_filter__q_score/090ca1116927">090ca1116927</a></li>
<li>qiime2__sample_classifier__classify_samples was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__classify_samples/e72fb1ecbadc">e72fb1ecbadc</a></li>
<li>qiime2__sample_classifier__classify_samples_from_dist was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__classify_samples_from_dist/aeb2a22548a5">aeb2a22548a5</a></li>
<li>qiime2__sample_classifier__classify_samples_ncv was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__classify_samples_ncv/23c5522fa836">23c5522fa836</a></li>
<li>qiime2__sample_classifier__confusion_matrix was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__confusion_matrix/e0a29b2a35a8">e0a29b2a35a8</a></li>
<li>qiime2__sample_classifier__fit_classifier was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__fit_classifier/f31f3c575d7e">f31f3c575d7e</a></li>
<li>qiime2__sample_classifier__fit_regressor was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__fit_regressor/d0708941b20b">d0708941b20b</a></li>
<li>qiime2__sample_classifier__heatmap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__heatmap/5ceed9008edb">5ceed9008edb</a></li>
<li>qiime2__sample_classifier__metatable was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__metatable/30cdc8cb01d0">30cdc8cb01d0</a></li>
<li>qiime2__sample_classifier__predict_classification was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__predict_classification/d4dd156970fc">d4dd156970fc</a></li>
<li>qiime2__sample_classifier__predict_regression was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__predict_regression/f7c33b0adf29">f7c33b0adf29</a></li>
<li>qiime2__sample_classifier__regress_samples was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__regress_samples/09981e91ac53">09981e91ac53</a></li>
<li>qiime2__sample_classifier__regress_samples_ncv was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__regress_samples_ncv/e6d86f57fe1a">e6d86f57fe1a</a></li>
<li>qiime2__sample_classifier__scatterplot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__scatterplot/195348fe70ef">195348fe70ef</a></li>
<li>qiime2__sample_classifier__split_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__split_table/a80604576ca2">a80604576ca2</a></li>
<li>qiime2__sample_classifier__summarize was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__sample_classifier__summarize/d2cd82660ab6">d2cd82660ab6</a></li>
<li>qiime2__taxa__barplot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__taxa__barplot/124673b2e9e7">124673b2e9e7</a></li>
<li>qiime2__taxa__collapse was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__taxa__collapse/16e425d54e64">16e425d54e64</a></li>
<li>qiime2__taxa__filter_seqs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__taxa__filter_seqs/2e3425c03486">2e3425c03486</a></li>
<li>qiime2__taxa__filter_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__taxa__filter_table/8415c3cbedb6">8415c3cbedb6</a></li>
<li>qiime2__vsearch__cluster_features_closed_reference was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__vsearch__cluster_features_closed_reference/99f3bb0084fe">99f3bb0084fe</a></li>
<li>qiime2__vsearch__cluster_features_de_novo was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__vsearch__cluster_features_de_novo/397c1be954c2">397c1be954c2</a></li>
<li>qiime2__vsearch__cluster_features_open_reference was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__vsearch__cluster_features_open_reference/d62c0266f393">d62c0266f393</a></li>
<li>qiime2__vsearch__dereplicate_sequences was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__vsearch__dereplicate_sequences/4fb2b5e9beba">4fb2b5e9beba</a></li>
<li>qiime2__vsearch__fastq_stats was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__vsearch__fastq_stats/55e1a7184edd">55e1a7184edd</a></li>
<li>qiime2__vsearch__merge_pairs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__vsearch__merge_pairs/f455181d916d">f455181d916d</a></li>
<li>qiime2__vsearch__uchime_denovo was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__vsearch__uchime_denovo/2ecd644cdfcf">2ecd644cdfcf</a></li>
<li>qiime2__vsearch__uchime_ref was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__vsearch__uchime_ref/7dbbd990440e">7dbbd990440e</a></li>
<li>qiime2_core__tools__export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2_core__tools__export/f47ed6c69f5d">f47ed6c69f5d</a></li>
<li>qiime2_core__tools__import was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2_core__tools__import/10447a4b0cc3">10447a4b0cc3</a></li>
</ul>
<h2 id="assembly">Assembly</h2>
<ul>
<li>merqury was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/merqury/d7edbc9c3a07">d7edbc9c3a07</a></li>
<li>pretext_graph was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pretext_graph/75b4a2298714">75b4a2298714</a></li>
<li>pretext_map was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pretext_map/79b48f02db49">79b48f02db49</a></li>
<li>rnaspades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/rnaspades/28189050e437">28189050e437</a></li>
<li>spades_biosyntheticspades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/spades_biosyntheticspades/604782a8a53a">604782a8a53a</a></li>
<li>spades_coronaspades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/spades_coronaspades/9678993ca5bd">9678993ca5bd</a></li>
<li>spades_metaplasmidspades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/spades_metaplasmidspades/037f9927c4ff">037f9927c4ff</a></li>
<li>spades_metaviralspades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/spades_metaviralspades/5b26685e5d3b">5b26685e5d3b</a></li>
<li>spades_plasmidspades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/spades_plasmidspades/7bb235ff0746">7bb235ff0746</a></li>
<li>spades_rnaviralspades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/spades_rnaviralspades/de1260f8a300">de1260f8a300</a></li>
<li>metaspades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/nml/metaspades/f369ef5f210b">f369ef5f210b</a></li>
<li>spades was updated to <a href="https://toolshed.g2.bx.psu.edu/view/nml/spades/a90db5dbaaf3">a90db5dbaaf3</a></li>
</ul>
<h2 id="mapping">Mapping</h2>
<ul>
<li>pbmm2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pbmm2/f4ec47f1a8da">f4ec47f1a8da</a></li>
<li>rgrnastar was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/rgrnastar/b0f2be869d6d">b0f2be869d6d</a></li>
<li>rna_starsolo was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/rna_starsolo/42ce70172b72">42ce70172b72</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>diann was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/diann/ff8c9e0e8a7b">ff8c9e0e8a7b</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6">40cc19c0dbd6</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834">fc36cfd19834</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
</ul>
<h2 id="annotation">Annotation</h2>
<ul>
<li>agat was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/agat/a6318f87f2cd">a6318f87f2cd</a></li>
<li>aegean_canongff3 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/aegean_canongff3/c45c9dd066e2">c45c9dd066e2</a></li>
<li>aegean_gaeval was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/aegean_gaeval/8dc7512c9dc9">8dc7512c9dc9</a></li>
<li>aegean_locuspocus was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/aegean_locuspocus/1fdc517743e6">1fdc517743e6</a></li>
<li>aegean_parseval was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/aegean_parseval/d6c074a93c51">d6c074a93c51</a></li>
<li>bakta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bakta/92eee5f31117">92eee5f31117</a></li>
<li>funannotate_annotate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/funannotate_annotate/d0336d67702b">d0336d67702b</a></li>
<li>funannotate_compare was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/funannotate_compare/57c6718cbfcc">57c6718cbfcc</a></li>
</ul>
<h2 id="imaging">Imaging</h2>
<ul>
<li>superdsm was updated to <a href="https://toolshed.g2.bx.psu.edu/view/imgteam/superdsm/dc5f72f6b1e9">dc5f72f6b1e9</a></li>
</ul>
<h2 id="evolution">Evolution</h2>
<ul>
<li>codeml was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/codeml/961a712f9743">961a712f9743</a></li>
</ul>
<h2 id="fastafastq">FASTA/FASTQ</h2>
<ul>
<li>seqprep was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/seqprep/8a0aa44e1e5b">8a0aa44e1e5b</a></li>
</ul>
<h2 id="graphdisplay-data">Graph/Display Data</h2>
<ul>
<li>pretext_snapshot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pretext_snapshot/6c571966cfb9">6c571966cfb9</a></li>
</ul>
<h2 id="metagenomic-analysis">Metagenomic Analysis</h2>
<ul>
<li>cat_add_names was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cat_add_names/21bf2f07f3f3">21bf2f07f3f3</a></li>
<li>cat_bins was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cat_bins/0e63d03c8790">0e63d03c8790</a></li>
<li>cat_contigs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cat_contigs/f41dbb0b9ff8">f41dbb0b9ff8</a></li>
<li>cat_prepare was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cat_prepare/51906c8c692a">51906c8c692a</a></li>
<li>cat_summarise was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cat_summarise/a8216def322b">a8216def322b</a></li>
<li>customize_metaphlan_database was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/customize_metaphlan_database/5ed774e1616e">5ed774e1616e</a></li>
<li>extract_metaphlan_database was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/extract_metaphlan_database/6a1db3b02ea7">6a1db3b02ea7</a></li>
<li>merge_metaphlan_tables was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/merge_metaphlan_tables/7f5d7b0e9884">7f5d7b0e9884</a></li>
<li>metaphlan was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/metaphlan/fd69c607b43f">fd69c607b43f</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
</ul>
<h2 id="metabolomics">Metabolomics</h2>
<ul>
<li>dimet_abundance_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_abundance_plot/1df18470e3d0">1df18470e3d0</a></li>
<li>dimet_bivariate_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_bivariate_analysis/89e637c99bed">89e637c99bed</a></li>
<li>dimet_differential_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_analysis/e45e03a99d56">e45e03a99d56</a></li>
<li>dimet_differential_multigroup_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_multigroup_analysis/b581ea4908ae">b581ea4908ae</a></li>
<li>dimet_enrichment_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_enrichment_plot/2de209fb390b">2de209fb390b</a></li>
<li>dimet_isotopologues_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_isotopologues_plot/31b19ad28c81">31b19ad28c81</a></li>
<li>dimet_metabologram was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_metabologram/7ff4f61789de">7ff4f61789de</a></li>
<li>dimet_pca_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_analysis/c0103ea608fc">c0103ea608fc</a></li>
<li>dimet_pca_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_plot/23f87b8cc62b">23f87b8cc62b</a></li>
<li>dimet_timecourse_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_timecourse_analysis/40edef7d7f74">40edef7d7f74</a></li>
</ul>On 2024-02-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #432UseGalaxy.eu Tool Updates for 2024-02-112024-02-11T00:00:00+01:002024-02-11T00:00:00+01:00https://galaxyproject.eu/posts/2024/02/11/tool-update<p>On 2024-02-11, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#431/">Jenkins Build #431</a></p>
<h2 id="metabolomics">Metabolomics</h2>
<ul>
<li>matchms_add_key was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_add_key/3c82adf06cd5">3c82adf06cd5</a></li>
<li>matchms_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/165f303aa2d1">165f303aa2d1</a></li>
<li>matchms_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/865d1539e64f">865d1539e64f</a></li>
<li>matchms_filtering was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/6161895506ff">6161895506ff</a></li>
<li>matchms_fingerprint_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/5be32c7ce669">5be32c7ce669</a></li>
<li>matchms_formatter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/23d4bc72c505">23d4bc72c505</a></li>
<li>matchms_formatter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/34439ffa6a60">34439ffa6a60</a></li>
<li>matchms_metadata_export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/c01868645f1b">c01868645f1b</a></li>
<li>matchms_metadata_match was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/41cf8dd03e42">41cf8dd03e42</a></li>
<li>matchms_metadata_match was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/91b4b0c9a384">91b4b0c9a384</a></li>
<li>matchms_metadata_merge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/3a37748f6c95">3a37748f6c95</a></li>
<li>matchms_metadata_merge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/99ad7552fb10">99ad7552fb10</a></li>
<li>matchms_networking was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/2200e9b7a2b3">2200e9b7a2b3</a></li>
<li>matchms_networking was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/3b512cb31cb5">3b512cb31cb5</a></li>
<li>matchms_remove_key was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_key/358a151ab81e">358a151ab81e</a></li>
<li>matchms_spectral_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/50229f084c4e">50229f084c4e</a></li>
<li>matchms_spectral_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/dbe94781524a">dbe94781524a</a></li>
<li>matchms_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/114617e6ad33">114617e6ad33</a></li>
<li>matchms_subsetting was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/4ef214cf07c1">4ef214cf07c1</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
</ul>
<h2 id="chemicaltoolbox">ChemicalToolBox</h2>
<ul>
<li>fastpca was updated to <a href="https://toolshed.g2.bx.psu.edu/view/chemteam/fastpca/dd195f7a791c">dd195f7a791c</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
</ul>
<h2 id="assembly">Assembly</h2>
<ul>
<li>cactus_cactus was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxy-australia/cactus_cactus/098506c54016">098506c54016</a></li>
<li>cactus_export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxy-australia/cactus_export/c44f824c051a">c44f824c051a</a></li>
<li>hifiasm_meta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxy-australia/hifiasm_meta/213df31ba341">213df31ba341</a></li>
</ul>
<h2 id="graphdisplay-data">Graph/Display Data</h2>
<ul>
<li>export2graphlan was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/export2graphlan/635c90a27692">635c90a27692</a></li>
</ul>
<h2 id="climate-analysis">Climate Analysis</h2>
<ul>
<li>c3s was updated to <a href="https://toolshed.g2.bx.psu.edu/view/climate/c3s/bd153c794da1">bd153c794da1</a></li>
</ul>
<h2 id="annotation">Annotation</h2>
<ul>
<li>fargene was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/fargene/b982a9ea939c">b982a9ea939c</a></li>
<li>hamronize_summarize was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hamronize_summarize/f8bcc852f6b3">f8bcc852f6b3</a></li>
<li>hamronize_tool was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hamronize_tool/e13b801516dd">e13b801516dd</a></li>
<li>mitos2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mitos2/b815ec682418">b815ec682418</a></li>
</ul>
<h2 id="convert-formats">Convert Formats</h2>
<ul>
<li>biom_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/biom_convert/091bb5922a82">091bb5922a82</a></li>
</ul>
<h2 id="evolution">Evolution</h2>
<ul>
<li>codeml was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/codeml/dba114391c98">dba114391c98</a></li>
</ul>
<h2 id="fastafastq">FASTA/FASTQ</h2>
<ul>
<li>bbtools_bbduk was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbduk/0840ba83860c">0840ba83860c</a></li>
<li>bbtools_bbmerge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmerge/6d084528a6f1">6d084528a6f1</a></li>
<li>bbtools_tadpole was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_tadpole/e4fb34b79770">e4fb34b79770</a></li>
<li>fastqe was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/fastqe/c1a33f603da2">c1a33f603da2</a></li>
</ul>
<h2 id="mapping">Mapping</h2>
<ul>
<li>bbtools_bbmap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmap/3171f7f52576">3171f7f52576</a></li>
</ul>
<h2 id="metagenomic-analysis">Metagenomic Analysis</h2>
<ul>
<li>dram_annotate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dram_annotate/0515750e7b10">0515750e7b10</a></li>
<li>dram_distill was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dram_distill/9a0944d08a99">9a0944d08a99</a></li>
<li>dram_merge_annotations was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dram_merge_annotations/866be6c60810">866be6c60810</a></li>
<li>dram_neighborhoods was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dram_neighborhoods/669459119c20">669459119c20</a></li>
<li>dram_strainer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dram_strainer/5b577e90f822">5b577e90f822</a></li>
<li>dram_strainer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dram_strainer/9c8f2cfb70ba">9c8f2cfb70ba</a></li>
<li>kraken2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/kraken2/20e2f64aa1fe">20e2f64aa1fe</a></li>
<li>phyloseq_from_dada2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_dada2/b85ba18a8f36">b85ba18a8f36</a></li>
<li>phyloseq_plot_ordination was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_ordination/92e77800ef2c">92e77800ef2c</a></li>
<li>phyloseq_plot_richness was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_richness/1ff178d1757e">1ff178d1757e</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="rna-analysis">RNA Analysis</h2>
<ul>
<li>limma_voom was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/limma_voom/119b069fc845">119b069fc845</a></li>
</ul>
<h2 id="variant-calling">Variant Calling</h2>
<ul>
<li>bbtools_callvariants was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_callvariants/adec76ebc868">adec76ebc868</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
</ul>On 2024-02-11, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #431UseGalaxy.eu Tool Updates for 2024-02-042024-02-04T00:00:00+01:002024-02-04T00:00:00+01:00https://galaxyproject.eu/posts/2024/02/04/tool-update<p>On 2024-02-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#430/">Jenkins Build #430</a></p>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6">40cc19c0dbd6</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834">fc36cfd19834</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
</ul>
<h2 id="convert-formats">Convert Formats</h2>
<ul>
<li>graphicsmagick_image_compare was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_compare/bb871fbe177f">bb871fbe177f</a></li>
<li>graphicsmagick_image_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_convert/04bfb8ee7e23">04bfb8ee7e23</a></li>
<li>graphicsmagick_image_montage was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/graphicsmagick_image_montage/391a19477a12">391a19477a12</a></li>
<li>hictk was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/hictk/a2e75bad2872">a2e75bad2872</a></li>
</ul>
<h2 id="annotation">Annotation</h2>
<ul>
<li>cpat was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/cpat/1ac12c0cc7a0">1ac12c0cc7a0</a></li>
<li>braker3 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/genouest/braker3/96ad8f880755">96ad8f880755</a></li>
<li>genenotebook_genenotebook_build was updated to <a href="https://toolshed.g2.bx.psu.edu/view/gga/genenotebook_genenotebook_build/dfb2bc3aedbd">dfb2bc3aedbd</a></li>
</ul>
<h2 id="assembly">Assembly</h2>
<ul>
<li>hapog was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hapog/ee0d6e789958">ee0d6e789958</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="rna-analysis">RNA Analysis</h2>
<ul>
<li>htseq_count was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lparsons/htseq_count/4418229c501e">4418229c501e</a></li>
</ul>
<h2 id="virology">Virology</h2>
<ul>
<li>snipit was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/snipit/92b9fd5f1f9f">92b9fd5f1f9f</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
</ul>On 2024-02-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #430UseGalaxy.eu Tool Updates for 2024-01-282024-01-28T00:00:00+01:002024-01-28T00:00:00+01:00https://galaxyproject.eu/posts/2024/01/28/tool-update<p>On 2024-01-28, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#429/">Jenkins Build #429</a></p>
<h2 id="data-and-metadata-management">Data and Metadata Management</h2>
<ul>
<li>eal_table_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/eal_table_template/32707c9f5261">32707c9f5261</a></li>
<li>eal_templates was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/eal_templates/debfa8a223c0">debfa8a223c0</a></li>
<li>eml2eal was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/eml2eal/248b03f124dd">248b03f124dd</a></li>
<li>eml2eal was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/eml2eal/bd8b3e7541d5">bd8b3e7541d5</a></li>
<li>entities_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/entities_template/8de58d879d6e">8de58d879d6e</a></li>
<li>geo_cov_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/geo_cov_template/4f5816b57c13">4f5816b57c13</a></li>
<li>geo_cov_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/geo_cov_template/a5f887cfcf94">a5f887cfcf94</a></li>
<li>makeeml was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/makeeml/34dcb86a9351">34dcb86a9351</a></li>
<li>raster_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/raster_template/06e29cdc08bf">06e29cdc08bf</a></li>
<li>taxo_cov_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/taxo_cov_template/a45fa46f8010">a45fa46f8010</a></li>
<li>vector_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/vector_template/559744b4c50c">559744b4c50c</a></li>
</ul>
<h2 id="ecoregionalization">Ecoregionalization</h2>
<ul>
<li>ecoregion_brt_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_brt_analysis/fc621f3f8226">fc621f3f8226</a></li>
<li>ecoregion_clara_cluster was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_clara_cluster/edb8d19735a6">edb8d19735a6</a></li>
<li>ecoregion_cluster_estimate was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_cluster_estimate/e94a25eed489">e94a25eed489</a></li>
<li>ecoregion_eco_map was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_eco_map/b38b954b92b9">b38b954b92b9</a></li>
<li>ecoregion_taxa_seeker was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_taxa_seeker/9dc992f80c25">9dc992f80c25</a></li>
</ul>
<h2 id="metabolomics">Metabolomics</h2>
<ul>
<li>dimet_abundance_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_abundance_plot/07164270ec13">07164270ec13</a></li>
<li>dimet_differential_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_analysis/dc199abf3db4">dc199abf3db4</a></li>
<li>dimet_differential_multigroup_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_multigroup_analysis/6f36c9072433">6f36c9072433</a></li>
<li>dimet_enrichment_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_enrichment_plot/79720105f8c0">79720105f8c0</a></li>
<li>dimet_isotopologues_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_isotopologues_plot/9f4451d9d542">9f4451d9d542</a></li>
<li>dimet_metabologram was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_metabologram/8d8ae3697a65">8d8ae3697a65</a></li>
<li>dimet_pca_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_analysis/a01453baaf5e">a01453baaf5e</a></li>
<li>dimet_pca_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_plot/a06d1febf79e">a06d1febf79e</a></li>
<li>dimet_timecourse_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_timecourse_analysis/b97f326c055d">b97f326c055d</a></li>
<li>recetox_msfinder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_msfinder/e7eff0c9baa3">e7eff0c9baa3</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
<li>proteinortho was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho/c5dd4f86d981">c5dd4f86d981</a></li>
<li>proteinortho_grab_proteins was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho_grab_proteins/079fffa782df">079fffa782df</a></li>
<li>proteinortho_summary was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/proteinortho_summary/f960d1fa3739">f960d1fa3739</a></li>
</ul>
<h2 id="annotation">Annotation</h2>
<ul>
<li>isescan was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/isescan/9e776e7fab4f">9e776e7fab4f</a></li>
<li>mitos was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mitos/ca1142e5df8b">ca1142e5df8b</a></li>
<li>mitos2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mitos2/af3c1dc1d141">af3c1dc1d141</a></li>
</ul>
<h2 id="metagenomic-analysis">Metagenomic Analysis</h2>
<ul>
<li>lotus2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/earlhaminst/lotus2/eb7baf1f72ca">eb7baf1f72ca</a></li>
<li>recentrifuge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/recentrifuge/12f0968f171c">12f0968f171c</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="virology">Virology</h2>
<ul>
<li>varvamp was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/varvamp/462e62be07e1">462e62be07e1</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
</ul>On 2024-01-28, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #429UseGalaxy.eu Tool Updates for 2024-01-212024-01-21T00:00:00+01:002024-01-21T00:00:00+01:00https://galaxyproject.eu/posts/2024/01/21/tool-update<p>On 2024-01-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#428/">Jenkins Build #428</a></p>
<h2 id="get-data">Get Data</h2>
<ul>
<li>obis_data was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/obis_data/1fcd81d65467">1fcd81d65467</a></li>
</ul>
<h2 id="biodiversity-data-exploration">Biodiversity data exploration</h2>
<ul>
<li>obisindicators was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/obisindicators/393957ecc97d">393957ecc97d</a></li>
</ul>
<h2 id="indicators-from-geometric-mean">Indicators from geometric mean</h2>
<ul>
<li>bar_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/bar_plot/985f8839aebd">985f8839aebd</a></li>
<li>map_shp was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/map_shp/ce9979488ebb">ce9979488ebb</a></li>
<li>mean_geom was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/mean_geom/a11841e270f3">a11841e270f3</a></li>
</ul>
<h2 id="metabolomics">Metabolomics</h2>
<ul>
<li>matchms_add_key was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_add_key/51da674b945d">51da674b945d</a></li>
<li>matchms_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/165f303aa2d1">165f303aa2d1</a></li>
<li>matchms_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/bff7bfcf975e">bff7bfcf975e</a></li>
<li>matchms_filtering was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/da15e8ea3b28">da15e8ea3b28</a></li>
<li>matchms_fingerprint_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/1d3ee4f9f63d">1d3ee4f9f63d</a></li>
<li>matchms_formatter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/d888a64f7c2a">d888a64f7c2a</a></li>
<li>matchms_formatter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/f76a397afbe1">f76a397afbe1</a></li>
<li>matchms_metadata_export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/7a489b217930">7a489b217930</a></li>
<li>matchms_metadata_export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/cbadbec49b5d">cbadbec49b5d</a></li>
<li>matchms_metadata_match was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/05a7fc94e66c">05a7fc94e66c</a></li>
<li>matchms_metadata_merge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/3a37748f6c95">3a37748f6c95</a></li>
<li>matchms_metadata_merge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/ec25de0f0c58">ec25de0f0c58</a></li>
<li>matchms_networking was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/2200e9b7a2b3">2200e9b7a2b3</a></li>
<li>matchms_networking was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/3cd1cf3034d1">3cd1cf3034d1</a></li>
<li>matchms_remove_key was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_key/0a64e2bcce96">0a64e2bcce96</a></li>
<li>matchms_spectral_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/44e7027714d7">44e7027714d7</a></li>
<li>matchms_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/1dcd8b0bd608">1dcd8b0bd608</a></li>
<li>matchms_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/fc1bc38ede0b">fc1bc38ede0b</a></li>
<li>matchms_subsetting was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/1387786b6206">1387786b6206</a></li>
<li>matchms_subsetting was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/a598091029ad">a598091029ad</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
</ul>
<h2 id="metagenomic-analysis">Metagenomic Analysis</h2>
<ul>
<li>bracken was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/bracken/1d4bd12f01cf">1d4bd12f01cf</a></li>
<li>maxbin2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/mbernt/maxbin2/9da9706f7ca9">9da9706f7ca9</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6">40cc19c0dbd6</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834">fc36cfd19834</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
</ul>
<h2 id="annotation">Annotation</h2>
<ul>
<li>cpt_annotation_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_annotation_table/83af8dfd079d">83af8dfd079d</a></li>
<li>cpt_convert_glimmer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_convert_glimmer/746e52d94b49">746e52d94b49</a></li>
<li>cpt_genome_editor was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_genome_editor/0e8079ac24f8">0e8079ac24f8</a></li>
<li>cpt_get_orfs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_get_orfs/f56389d8abda">f56389d8abda</a></li>
<li>cpt_gff_extract_seq was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_extract_seq/3d9f283ff09d">3d9f283ff09d</a></li>
<li>cpt_gff_rebase was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_rebase/d0b52c1d6b25">d0b52c1d6b25</a></li>
<li>cpt_lipory was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_lipory/2654bcd9b14d">2654bcd9b14d</a></li>
<li>cpt_shinefind was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_shinefind/75f99d20c2a2">75f99d20c2a2</a></li>
<li>mitos was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mitos/8b08ea650060">8b08ea650060</a></li>
<li>mitos2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mitos2/e95d52d295d7">e95d52d295d7</a></li>
<li>orthofinder_onlygroups was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/orthofinder_onlygroups/b3d25fae5389">b3d25fae5389</a></li>
</ul>
<h2 id="convert-formats">Convert Formats</h2>
<ul>
<li>cpt_convert_mga was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_convert_mga/2c83f55438c9">2c83f55438c9</a></li>
<li>cpt_gbk_to_5col was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gbk_to_5col/8f5f2142fc2b">8f5f2142fc2b</a></li>
<li>cpt_gbk_to_gff was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gbk_to_gff/a921d6148d88">a921d6148d88</a></li>
<li>cpt_gff_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_split/4b60e0b6a150">4b60e0b6a150</a></li>
<li>cpt_gff_to_gbk was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_to_gbk/03384dbb511d">03384dbb511d</a></li>
</ul>
<h2 id="assembly">Assembly</h2>
<ul>
<li>hifiasm was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/hifiasm/df25d4fb79b7">df25d4fb79b7</a></li>
</ul>
<h2 id="collection-operations">Collection Operations</h2>
<ul>
<li>pick_value was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/pick_value/b19e21af9c52">b19e21af9c52</a></li>
</ul>
<h2 id="fastafastq">FASTA/FASTQ</h2>
<ul>
<li>fastqe was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/fastqe/d77a9c2a242d">d77a9c2a242d</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
</ul>
<h2 id="apollo">Apollo</h2>
<ul>
<li>apollo_create_account was updated to <a href="https://toolshed.g2.bx.psu.edu/view/gga/apollo_create_account/e80d29fd2a33">e80d29fd2a33</a></li>
<li>apollo_list_organism was updated to <a href="https://toolshed.g2.bx.psu.edu/view/gga/apollo_list_organism/2c749ed310da">2c749ed310da</a></li>
</ul>On 2024-01-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #428UseGalaxy.eu Tool Updates for 2024-01-142024-01-14T00:00:00+01:002024-01-14T00:00:00+01:00https://galaxyproject.eu/posts/2024/01/14/tool-update<p>On 2024-01-14, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#427/">Jenkins Build #427</a></p>
<h2 id="gis-data-handling">GIS Data Handling</h2>
<ul>
<li>interpolation_run_idw_interpolation was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ecology/interpolation_run_idw_interpolation/d07fcc660f3c">d07fcc660f3c</a></li>
</ul>
<h2 id="qiime-2">QIIME 2</h2>
<ul>
<li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li>
</ul>
<h2 id="proteomics">Proteomics</h2>
<ul>
<li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li>
<li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li>
<li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li>
</ul>
<h2 id="expression-tools">Expression Tools</h2>
<ul>
<li>map_param_value was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/map_param_value/5ac8a4bf7a8d">5ac8a4bf7a8d</a></li>
</ul>
<h2 id="metagenomic-analysis">Metagenomic Analysis</h2>
<ul>
<li>jellyfish was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/jellyfish/dcd30574a456">dcd30574a456</a></li>
<li>polypolish was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/polypolish/f355085dd2aa">f355085dd2aa</a></li>
</ul>
<h2 id="phylogenetics">Phylogenetics</h2>
<ul>
<li>hyphy_prime was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4">4072360120e4</a></li>
</ul>
<h2 id="none">None</h2>
<ul>
<li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li>
</ul>On 2024-01-14, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #427