On 2020-09-26, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #235
Variant Calling
- cutesv was updated to c0f8fe52948e
- plink was updated to 57ac42ec1be3
Proteomics
- cardinal_classification was updated to 24c000517173
- cardinal_combine was updated to 7e18fcb92a6a
- cardinal_data_exporter was updated to a5d09f2daf71
- cardinal_filtering was updated to e92efed83208
- cardinal_mz_images was updated to 08ebd8da780c
- cardinal_preprocessing was updated to ca727a6dede6
- cardinal_quality_report was updated to f365bad862c9
- cardinal_segmentations was updated to 2da46f180f35
- cardinal_spectra_plots was updated to 0b7e00e5b9d2
- metaquantome_db was updated to 7c45aa1c9464
- metaquantome_expand was updated to eb65ab160a10
- metaquantome_filter was updated to 7d1c20b315ff
- metaquantome_sample was updated to 49a957fb353a
- metaquantome_stat was updated to 982a442a98dd
- metaquantome_viz was updated to 02da24eac445
- openms_accuratemasssearch was updated to 0056247c6934
- openms_assaygeneratormetabo was updated to 2c3d2c216ff9
- openms_baselinefilter was updated to d9a4d7684e66
- openms_clustermasstraces was updated to 377c3c7c058c
- openms_clustermasstracesbyprecursor was updated to e58e7a1ce396
- openms_cometadapter was updated to 67b02e52296a
- openms_compnovo was updated to ef622c891b92
- openms_compnovocid was updated to 3cb0c3a334f5
- openms_consensusid was updated to 205508001e9a
- openms_consensusmapnormalizer was updated to 8a205687e384
- openms_cruxadapter was updated to 60b24c30af7d
- openms_cvinspector was updated to ae70a8086504
- openms_databasefilter was updated to fd64bf34cb08
- openms_decharger was updated to b7f550d1fa7e
- openms_decoydatabase was updated to 24fd374cbffc
- openms_demeanderize was updated to d45d3394c1c9
- openms_digestor was updated to ede260ee1404
- openms_dtaextractor was updated to 856b0f25f4cc
- openms_eicextractor was updated to aeaadbf1d7ec
- openms_epifany was updated to 015b55cd3570
- openms_erpairfinder was updated to 5056b45d484b
- openms_externalcalibration was updated to 2a7feb3bf985
- openms_falsediscoveryrate was updated to d07cd351f8ae
- openms_featurefindercentroided was updated to b5ede3ff996c
- openms_featurefinderidentification was updated to 8bdf87119680
- openms_featurefinderisotopewavelet was updated to b3881e7a2990
- openms_featurefindermetabo was updated to ede71c074e9a
- openms_featurefindermetaboident was updated to 59c8b1a9cf86
- openms_featurefindermrm was updated to 7407c66b08b4
- openms_featurefindermultiplex was updated to 18f63fd679e3
- openms_featurefindersuperhirn was updated to f35d5aa5d58a
- openms_featurelinkerlabeled was updated to be80f15b4192
- openms_featurelinkerunlabeled was updated to bf720ddf8333
- openms_featurelinkerunlabeledkd was updated to 4c485bb20e27
- openms_featurelinkerunlabeledqt was updated to f1604a5673a3
- openms_ffeval was updated to 6fb2f604537c
- openms_fidoadapter was updated to 39a1dd32a40d
- openms_fileconverter was updated to 9939af9b0ea3
- openms_filefilter was updated to daec99595337
- openms_fileinfo was updated to 32264aaa27b8
- openms_filemerger was updated to 04e7a86378d5
- openms_fuzzydiff was updated to 55f3c74f6ce6
- openms_gnpsexport was updated to d3cbea30faa4
- openms_highresprecursormasscorrector was updated to 829a9a4318c8
- openms_idconflictresolver was updated to 709b729227e9
- openms_idextractor was updated to 8118e5780beb
- openms_idfileconverter was updated to 6772d71b9150
- openms_idfilter was updated to 8d04dd993653
- openms_idmapper was updated to 0bdaa74d9a3a
- openms_idmassaccuracy was updated to f918cb7aefd5
- openms_idmerger was updated to ded32493f0f9
- openms_idposteriorerrorprobability was updated to 73d288112aef
- openms_idripper was updated to 3721c6380979
- openms_idrtcalibration was updated to 4215810bb49d
- openms_idscoreswitcher was updated to 04221d3a662c
- openms_idsplitter was updated to 50b4109ecac7
- openms_internalcalibration was updated to cca2b6c3ae61
- openms_isobaricanalyzer was updated to 6eb4a1a41639
- openms_labeledeval was updated to faed4bd76de4
- openms_lowmempeakpickerhires was updated to db038368c4c7
- openms_lowmempeakpickerhiresrandomaccess was updated to cdfb3d535a73
- openms_luciphoradapter was updated to 391133d30284
- openms_mapaligneridentification was updated to 12ae09b3a0b4
- openms_mapalignerposeclustering was updated to 06f0d6f36e23
- openms_mapalignerspectrum was updated to eb4c663659f7
- openms_mapalignertreeguided was updated to 4bdaddb03b67
- openms_mapnormalizer was updated to fcbe0103feed
- openms_maprttransformer was updated to aa2bf9c53765
- openms_mapstatistics was updated to 6530e5b0b966
- openms_maraclusteradapter was updated to 9edc02572ab9
- openms_mascotadapter was updated to 6ff54b799207
- openms_mascotadapteronline was updated to d9157dd6a489
- openms_masscalculator was updated to edb4ca47bad8
- openms_masstraceextractor was updated to 4e32bb5991e3
- openms_metaboliteadductdecharger was updated to 51203b9c8ef5
- openms_metabolitespectralmatcher was updated to 6950572aae5a
- openms_metaprosip was updated to d03467ead0fe
- openms_mrmmapper was updated to ecd19f3312fe
- openms_mrmpairfinder was updated to f8ed4723376c
- openms_mrmtransitiongrouppicker was updated to e0e2265fd2d6
- openms_msfraggeradapter was updated to 5a9c3e827da5
- openms_msgfplusadapter was updated to 2e87a752617e
- openms_mssimulator was updated to 6edc2f116865
- openms_msstatsconverter was updated to 80eb149b1579
- openms_multiplexresolver was updated to fb647b7cf2c1
- openms_myrimatchadapter was updated to b89d4041c578
- openms_mzmlsplitter was updated to 24a506151bdf
- openms_mztabexporter was updated to c679f920716e
- openms_noisefiltergaussian was updated to 43c3edaadb5d
- openms_noisefiltersgolay was updated to 6b555020d5f3
- openms_novoradapter was updated to ea8f9d83f34f
- openms_nucleicacidsearchengine was updated to 0b91652c7743
- openms_omssaadapter was updated to 62795cdea5ea
- openms_openpepxllf was updated to a8c028751a74
- openms_openswathanalyzer was updated to 4da16805dea6
- openms_openswathassaygenerator was updated to df72ca515420
- openms_openswathchromatogramextractor was updated to e322e005450c
- openms_openswathconfidencescoring was updated to e8f64a7dc470
- openms_openswathdecoygenerator was updated to 965413f29bf5
- openms_openswathfeaturexmltotsv was updated to 5368af178b30
- openms_openswathfilesplitter was updated to 2d856cba192b
- openms_openswathmzmlfilecacher was updated to 28a6bc00f369
- openms_openswathrewritetofeaturexml was updated to 9da6772a761c
- openms_openswathrtnormalizer was updated to 79dbeb3cbfb4
- openms_openswathworkflow was updated to 887be35bc42e
- openms_peakpickeriterative was updated to 911e9dda3eb2
- openms_peakpickerwavelet was updated to 9e47c4855b18
- openms_pepnovoadapter was updated to 5b1ccc4c4ab4
- openms_peptideindexer was updated to cb18120926b0
- openms_phosphoscoring was updated to 535b554505c6
- openms_precursorionselector was updated to fe761c27a561
- openms_precursormasscorrector was updated to e93ae0125dde
- openms_proteininference was updated to e80e453c3b04
- openms_proteinquantifier was updated to 8a45fd5a608a
- openms_proteinresolver was updated to f7ef238cc21e
- openms_psmfeatureextractor was updated to 3787addbb8e1
- openms_ptmodel was updated to 1063396cbea9
- openms_qccalculator was updated to 44856bd6bf27
- openms_qcembedder was updated to a717bea32e41
- openms_qcexporter was updated to bd8735ccc6f6
- openms_qcextractor was updated to 3a54cf566e55
- openms_qcimporter was updated to 83f22c5c5f92
- openms_qcmerger was updated to f4512d24a40b
- openms_qcshrinker was updated to ea3197d16843
- openms_qualitycontrol was updated to 6d9cd32c941b
- openms_rnadigestor was updated to f7bc536b3bf3
- openms_rnamasscalculator was updated to 1af5b39289b8
- openms_rnpxlsearch was updated to 25cc460f9092
- openms_rnpxlxicfilter was updated to e7a97a131b5f
- openms_rtevaluation was updated to ece8b8f33a60
- openms_rtmodel was updated to de3eec8c9a17
- openms_seedlistgenerator was updated to 47ce7a087ec1
- openms_semanticvalidator was updated to f8c659715995
- openms_sequencecoveragecalculator was updated to 47ad03766bd8
- openms_simplesearchengine was updated to 047d6bdf5c9f
- openms_siriusadapter was updated to 1a6f39227aca
- openms_speclibcreator was updated to 15f9084434c0
- openms_speclibsearcher was updated to 531935403142
- openms_spectrafilterbernnorm was updated to 7250e2511a8e
- openms_spectrafiltermarkermower was updated to b210cea1b4f6
- openms_spectrafilternlargest was updated to 2f1ead9c86e0
- openms_spectrafilternormalizer was updated to ab1a5e597021
- openms_spectrafilterparentpeakmower was updated to a3404cddc8ee
- openms_spectrafilterscaler was updated to 8a699cac8a54
- openms_spectrafiltersqrtmower was updated to fa02542badb6
- openms_spectrafilterthresholdmower was updated to 347d9d613d1b
- openms_spectrafilterwindowmower was updated to b28211400cc4
- openms_spectramerger was updated to 7b8a7d2dab8f
- openms_spectrastsearchadapter was updated to 7e2e9379aec7
- openms_svmtheoreticalspectrumgeneratortrainer was updated to 416fc18f347a
- openms_targetedfileconverter was updated to aa62f8f48dd4
- openms_textexporter was updated to d063e2fe4ba4
- openms_ticcalculator was updated to 1aca7da945ba
- openms_tofcalibration was updated to 58bdbab5cc5e
- openms_transformationevaluation was updated to 51f839154598
- openms_xmlvalidator was updated to 8d2e828561d6
- openms_xtandemadapter was updated to 213368382d6c
Evolution
- codeml was updated to b2b8e75a962d
Phylogenetics
- hyphy_absrel was updated to 4cc4dbca2f02
- hyphy_bgm was updated to 91006eb8b84e
- hyphy_busted was updated to 98ee8ba908d6
- hyphy_fade was updated to a4398cfa8792
- hyphy_fel was updated to af7490b6329b
- hyphy_fubar was updated to 47145f568cd6
- hyphy_gard was updated to 88c4aa435ded
- hyphy_meme was updated to 546f2f99b820
- hyphy_prime was updated to acd9dfe3dec0
- hyphy_relax was updated to 6a6300b42803
- hyphy_slac was updated to d6f4ff2aed07
- hyphy_sm19 was updated to 23b9bd244670
hca_sc_scanpy_tools
- scanpy_compute_graph was updated to e6c989a9211c
- scanpy_find_cluster was updated to 5e68e130fafe
- scanpy_run_tsne was updated to b5e1939cc155
- scanpy_run_umap was updated to 135e8cacb57e
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