Updated PhageTerm

March 14, 2018 Pasteur devops

We have updated PhageTerm to version 1.0.11

Updated Salmonella CRISPR Typing

January 26, 2018 Pasteur devops

We have updated Salmonella CRISPR Typing to version 1.0.1 CRISPR Typing.md

Updated multiqc

November 30, 2017 Pasteur devops

We have updated multiqc to version 0.7.0

We have updated Generate readmap and histograms from alignment files from sRbowtie aligment to version 1.2.0 readmap and histograms from alignment files from sRbowtie aligment.md

Updated Small RNA Signatures

November 24, 2017 Pasteur devops

We have updated Small RNA Signatures to version 3.1.0 RNA Signatures.md

Updated small_rna_maps

November 24, 2017 Pasteur devops

We have updated small_rna_maps to version 2.4.1

Updated DESeq2

November 23, 2017 Pasteur devops

We have updated DESeq2 to version 1.18.0

Updated Fetch closest non-overlapping feature

November 17, 2017 Pasteur devops

We have updated Fetch closest non-overlapping feature to version 4.0.1 closest non-overlapping feature.md

Updated Get flanks

November 17, 2017 Pasteur devops

We have updated Get flanks to version 1.0.0 flanks.md

Updated Base Coverage

November 16, 2017 Pasteur devops

We have updated Base Coverage to version 1.0.0 Coverage.md

Updated Cluster

November 16, 2017 Pasteur devops

We have updated Cluster to version 1.0.0

Updated Complement

November 16, 2017 Pasteur devops

We have updated Complement to version 1.0.0

Updated Concatenate

November 16, 2017 Pasteur devops

We have updated Concatenate to version 1.0.1

Updated Coverage

November 16, 2017 Pasteur devops

We have updated Coverage to version 1.0.0

Updated Intersect

November 16, 2017 Pasteur devops

We have updated Intersect to version 1.0.0

Updated Join

November 16, 2017 Pasteur devops

We have updated Join to version 1.0.0

Updated Merge

November 16, 2017 Pasteur devops

We have updated Merge to version 1.0.0

Updated Subtract

November 16, 2017 Pasteur devops

We have updated Subtract to version 1.0.0

Updated Salmonella CRISPR Typing

November 10, 2017 Pasteur devops

We have updated Salmonella CRISPR Typing to version 1.0.0 CRISPR Typing.md

Updated FASTQ to FASTA

November 9, 2017 Pasteur devops

We have updated FASTQ to FASTA to version 0.0.13 to FASTA.md

Updated Annotate smRNA dataset

November 8, 2017 Pasteur devops

We have updated Annotate smRNA dataset to version 1.1.1 smRNA dataset.md

Updated Trinity

November 8, 2017 Pasteur devops

We have updated Trinity to version 2.2.0

Updated Filter sequences by length

October 27, 2017 Pasteur devops

We have updated Filter sequences by length to version 1.1 sequences by length.md

Updated Pick Fasta sequences

October 27, 2017 Pasteur devops

We have updated Pick Fasta sequences to version 1.0.0 Fasta sequences.md

Updated Normalize By Median

October 24, 2017 Pasteur devops

We have updated Normalize By Median to version 2.0.0 By Median.md

Updated NCBI blast suite

October 20, 2017 Pasteur devops

We have updated NCBI blast suite to version 2.6.0 blast suite.md

Updated sR_bowtie

October 19, 2017 Pasteur devops

We have updated sR_bowtie to version 1.1.1

Updated cap3

October 17, 2017 Pasteur devops

We have updated cap3 to version 2.0.0

Updated Get Fasta from BioMAJ

October 14, 2017 Pasteur devops

We have updated Get Fasta from BioMAJ to version 1.0.0 Fasta from BioMAJ.md

Updated Clip adapter

October 13, 2017 Pasteur devops

We have updated Clip adapter to version 2.0.1 adapter.md

Updated Oases_optimiser

October 13, 2017 Pasteur devops

We have updated Oases_optimiser to version 0.2.08

Updated Parse blast output and compile hits

October 13, 2017 Pasteur devops

We have updated Parse blast output and compile hits to version 2.4.3 blast output and compile hits.md

Updated Retrieve FASTA from NCBI

October 13, 2017 Pasteur devops

We have updated Retrieve FASTA from NCBI to version 2.0.0 FASTA from NCBI.md

Updated blast_to_scaffold

October 13, 2017 Pasteur devops

We have updated blast_to_scaffold to version 0.9.0

Updated fasta - tabular

October 13, 2017 Pasteur devops

We have updated fasta - tabular to version 1.1.0 - tabular.md

Updated pindel2vcf

September 28, 2017 Pasteur devops

We have updated pindel2vcf to version 0.2.5a3

Updated pindel

September 27, 2017 Pasteur devops

We have updated pindel to version 0.2.5a3

Updated growthpread

September 26, 2017 Pasteur devops

We have updated growthpread to version 1.07

Updated macs2

June 16, 2017 Pasteur devops

We have updated macs2 to version 2.1.0

Updated dsrc

May 10, 2017 Pasteur devops

We have updated dsrc to version 2.0

Updated IGblast

April 28, 2017 Pasteur devops

We have updated IGblast to version 1.4.0

Updated STAR

March 16, 2017 Pasteur devops

We have updated STAR to version 2.5.0a

Updated featureCounts

March 16, 2017 Pasteur devops

We have updated featureCounts to version 1.4.6-p3

Updated Booster

March 1, 2017 Pasteur devops

We have updated Booster to version 0.1.12

Updated elp

February 20, 2017 Pasteur devops

We have updated elp to version 2.0

Updated xxr

February 20, 2017 Pasteur devops

We have updated xxr to version 3.03

Updated breseq

February 15, 2017 Pasteur devops

We have updated breseq to new visualisation

Updated phageterm

February 13, 2017 Pasteur devops

We have updated phageterm to 1.0.8

Updated capsuleFinder

February 7, 2017 Pasteur devops

We have updated capsuleFinder to version 1.0.2

Updated conjdb

January 26, 2017 Pasteur devops

We have updated conjdb to version 1.0.2

Updated TXSSCAN

January 24, 2017 Pasteur devops

We have updated TXSSCAN to version 1.0.2

Updated parsesnp

January 23, 2017 Pasteur devops

We have updated parsesnp

Updated blast2myDB

January 1, 2017 Pasteur devops

We have updated blast2myDB, workflow