On 2020-05-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #211
hca_sc_scmap_tools
- scmap_get_std_output was updated to 39370cc49ae7
- scmap_scmap_cell was updated to b78cdc83a479
hca_sc_monocle3_tools
- monocle3_create was updated to 5a4b2fcd04d1
- monocle3_diffexp was updated to d333006ef72a
- monocle3_learngraph was updated to 17e74fba97fd
- monocle3_learngraph was updated to 8ec85828b6e6
- monocle3_ordercells was updated to a14bd9053e2b
- monocle3_partition was updated to 92ca41fbc123
- monocle3_partition was updated to b253a59cbb98
- monocle3_plotcells was updated to 016c39d243fb
- monocle3_preprocess was updated to 181ef11cba9d
- monocle3_reducedim was updated to 89aea3f27ed2
- monocle3_topmarkers was updated to bc2df96ef963
Metagenomic Analysis
- drep_dereplicate was updated to 8dfcdbeaeed8
hca_sc_label_analysis_tools
- ct_build_cell_ontology_dict was updated to 982a151b2960
- ct_combine_tool_outputs was updated to 44b6219cba2d
- ct_get_consensus_outputs was updated to 559fbff1f573
- ct_get_empirical_dist was updated to ce70358b0fe3
- ct_get_tool_perf_table was updated to 71c809e81f66
- ct_get_tool_pvals was updated to 39f348e76f41
hca_sc_garnett_tools
- garnett_check_markers was updated to ce67c5c9a56e
- garnett_classify_cells was updated to 715b020ecfb6
- garnett_get_feature_genes was updated to 3176cbad2800
- garnett_get_std_output was updated to 5f05e2901299
- garnett_train_classifier was updated to 9be21507358d
- garnett_transform_markers was updated to 1dc49d16e96c
- update_marker_file was updated to 3a1cfbb8aa56
Proteomics
- cardinal_classification was updated to 277dc652246e
- cardinal_classification was updated to 47fc5b518ffc
- cardinal_combine was updated to 525f201b86c1
- cardinal_data_exporter was updated to 653e66bd9eed
- cardinal_filtering was updated to a8157342d9a3
- cardinal_mz_images was updated to a69865da6f80
- cardinal_preprocessing was updated to 87bb011a4ee8
- cardinal_quality_report was updated to 0d4d4f16d455
- cardinal_segmentations was updated to b591450b3d1c
- cardinal_spectra_plots was updated to ebb7de263d49
hca_sc_scpred_tools
- scpred_eigen_decompose was updated to 3867289e6c1a
- scpred_get_feature_space was updated to 4a77d2091aec
- scpred_get_std_output was updated to 43ce84bd1d9a
- scpred_predict_labels was updated to 1bc003e80986
- scpred_train_model was updated to ba53e46a4275
- scpred_traint_test_split was updated to a6d66c9953ed
RNA Analysis
- tetoolkit_tetranscripts was updated to 2dfbcb88d16a
hca_sc_scmap_tools
- scmap_index_cell was updated to 11b4b9b85b9c
- scmap_index_cluster was updated to 38c6a98c7c60
- scmap_scmap_cell was updated to 5e6d54e2ab89
- scmap_scmap_cluster was updated to 49025c0cd5ca
- scmap_select_features was updated to 139321321fdd
Phylogenetics
- hyphy_absrel was updated to c78f3d7dd1db
- hyphy_bgm was updated to 7fd2d1451728
- hyphy_busted was updated to 686a8b41d09c
- hyphy_fade was updated to bf27b3df1a4f
- hyphy_fel was updated to ae95a6b22562
- hyphy_fubar was updated to ff1e9dd7ad13
- hyphy_gard was updated to 7a2092844346
- hyphy_meme was updated to b69685ed772e
- hyphy_prime was updated to e06961ac014b
- hyphy_relax was updated to 2ccc579efdde
- hyphy_slac was updated to 4ddef72f7f21
- hyphy_sm19 was updated to c102811766ef
- sarscov2formatter was updated to 1c664ff29354
- sarscov2summary was updated to 4ad8b610ea41
Convert Formats
- thermo_raw_file_converter was updated to 63769c4217a7
Proteomics
- maxquant was updated to 2133b0be850a
- proteomics_moff was updated to a96af68dafb2
Metagenomic Analysis
- drep_compare was updated to ef1c257adcbd
- drep_dereplicate was updated to 8dfcdbeaeed8
Nanopore
- nanocompore_sampcomp was updated to 557cf45ff2c8
- nanopolishcomp_eventaligncollapse was updated to ad011fc670d6
- nanopolishcomp_freqmethcalculate was updated to 80b6e23cb70d
Statistics
- create_tool_recommendation_model was updated to 5b3c08710e47
Imaging
- cp_cellprofiler was updated to 0b8f8406ee16
- cp_cellprofiler was updated to a98608f3abc5
- cp_common was updated to 0b7db679fff8
- cp_common was updated to 27396311a314
- cp_convert_objects_to_image was updated to 2690da374874
- cp_display_data_on_image was updated to 4e12ef887a2a
- cp_enhance_or_suppress_features was updated to 29188f9c4ca8
- cp_enhance_or_suppress_features was updated to 3f9747bda8c4
- cp_export_to_spreadsheet was updated to 10257d6d545b
- cp_export_to_spreadsheet was updated to 72a7f23f3a79
- cp_gray_to_color was updated to bbf1ef17c01b
- cp_identify_primary_objects was updated to 52c01fb29b2a
- cp_image_math was updated to 6d3851ac885f
- cp_mask_image was updated to 54d7d3450800
- cp_mask_image was updated to ca1421f7e3ed
- cp_measure_granularity was updated to 1062c9e44147
- cp_measure_granularity was updated to 382413f8ec1d
- cp_measure_image_area_occupied was updated to 7a08edbc790e
- cp_measure_image_intensity was updated to 2681008d726f
- cp_measure_image_quality was updated to 08a2cf887a44
- cp_measure_object_intensity was updated to 1373b765c8f9
- cp_measure_object_intensity was updated to b867e9317a06
- cp_measure_object_size_shape was updated to 5c9549983af8
- cp_measure_texture was updated to 0f751bb492de
- cp_measure_texture was updated to 658a2a451aec
- cp_relate_objects was updated to 3a2cfcd7c38a
- cp_relate_objects was updated to f3f45c42bc36
- cp_save_images was updated to 6e0f244acd32
- cp_save_images was updated to a45d360ae9d9
- projective_transformation_points was updated to a84822a0060c
- idr_download_by_ids was updated to 11036f6197d6
hca_sc_monocle3_tools
- monocle3_diffexp was updated to c5665e286bcf
- monocle3_learngraph was updated to 6b6b5a6d4021
- monocle3_ordercells was updated to 762c57e35238
- monocle3_partition was updated to 60cedaee808d
- monocle3_plotcells was updated to ef2dc754709c
Variant Calling
- gatk4_mutect2 was updated to 287c4af133e6
RNA Analysis
- chira_collapse was updated to c319651a733a
- chira_extract was updated to 89ab3b2973d8
- chira_map was updated to 1d3be7700f70
- chira_merge was updated to 35f433d0bd7f
- chira_quantify was updated to a1694947910f
- seurat was updated to 82fcdf530f87
- slamdunk was updated to 24657d5edede
ChemicalToolBox
- ctb_frankenstein_ligand was updated to 7a4306d69801
- rdock_rbcavity was updated to 06f376dc117a
- rdock_rbcavity was updated to 82193638d0c5
- rdock_rbdock was updated to 309fd04bcfd2
- rdock_sort_filter was updated to a6ec6c55267e
- rdock_sort_filter was updated to c88da0252e85
- gmx_editconf was updated to 259a1b8a1a39
- gmx_em was updated to dc98e5c8165a
- gmx_energy was updated to 345c2a16b95f
- gmx_makendx was updated to c119d1b9941b
- gmx_merge_topology_files was updated to d1d0efda35c0
- gmx_restraints was updated to a550cfa43262
- gmx_setup was updated to 8b2553f4f114
- gmx_sim was updated to 4b4232c98b6e
- gmx_solvate was updated to dc2400b6361d
- gmx_trj was updated to 6ac5f450ad31
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