msconvert is a tool to convert mass spectrometry data file formats.
A list of supported file formats is given below:
This tool is special in multiple ways. At first its one of the few tools that only runs in a very special Container, created by Dr. Matt Chambers, including Wine and Proteowizard. This is because many of the underlying libraries do need a Windows runtime environment and Matt found a way to make this available in a Container so Galaxy Europe and all others can use it on there Cloud systems.