GenOuest Events

Using Galaxy and the Workflow4metabolomics infrastructure to analyse your own metabolomics data.

The 2021 Galaxy Community Conference (GCC2021) will be held online: there will be 5 days training across all timezones, 3 days conference and 2 days Collaboration Fest.

Part of Cycle “Bioinformatique par la pratique” 2021

Part of Cycle “Bioinformatique par la pratique” 2021

Savoir utiliser l’environnement Galaxy

A general introduction on Galaxy, how to import data, run tools, and share analyses. Participants will run a whole NGS analysis using an ATAC-seq dataset as an example.

Part of Cycle “Bioinformatique par la pratique” 2021

Galaxy is supported by a large and active community distributed across the globe, which leads to rapid developments in every release. However, many of this features remain unknown by most of the users.

Galaxy is supported by a large and active community distributed across the globe, which leads to rapid developments in every release. However, many of this features remain unknown by most of the users.

Part of Cycle “Bioinformatique par la pratique” 2021

Galaxy is supported by a large and active community distributed across the globe, which leads to rapid developments in every release. However, many of this features remain unknown by most of the users.

Galaxy is supported by a large and active community distributed across the globe, which leads to rapid developments in every release. However, many of this features remain unknown by most of the users.

In Frebuary, the Galaxy Training Network day and Paper Cuts day will be held concurrently!

The Galaxy Community and ELIXIR organise a second webinar series to demonstrate how open software and public research infrastructures can be used in analysing and publishing SARS-CoV2 data.

Part of Cycle “Bioinformatique par la pratique” 2021

The Galaxy Community and ELIXIR organise a second webinar series to demonstrate how open software and public research infrastructures can be used in analysing and publishing SARS-CoV2 data.

Part of Cycle “Bioinformatique par la pratique” 2021

This will be an online event, spanning all time zones. All training sessions are pre-recorded, so you can work through them at your own pace, and manage your own time. A large community of GTN trainers will be available via online support to answer all your questions.

The Galaxy Community and ELIXIR organise a second webinar series to demonstrate how open software and public research infrastructures can be used in analysing and publishing SARS-CoV2 data.

How to grow the Galaxy Developer community, including a discussion of a new Galaxy Developer Training Course, and other ways we can make it easier for new developers.

The Galaxy Community and ELIXIR organise a second webinar series to demonstrate how open software and public research infrastructures can be used in analysing and publishing SARS-CoV2 data.

The Galaxy Community and ELIXIR organise a second webinar series to demonstrate how open software and public research infrastructures can be used in analysing and publishing SARS-CoV2 data.

This workshop will cover introductory and advanced topics you need to know to set up your own production, high-performance and multi-user Galaxy instance. Sessions will be intensive and hands-on, and taught by experienced instructors from the Galaxy Community.

FastAPI is a modern, fast (high-performance), web framework for building APIs with Python 3.6+ based on standard Python type hints.

The Galaxy Community and ELIXIR organise a second webinar series to demonstrate how open software and public research infrastructures can be used in analysing and publishing SARS-CoV2 data.

This is a followup to discussion to the December 2020 roundtable, where Galaxy Working Groups were launched. Galaxy Working Groups are a major shift in how Galaxy Project work and direction are managed. This call will be a followup to see how our first month has gone, and how goal setting and tracking fro 2021Q1 is going.

The first call of the Galaxy Metabolomics Community will be held on the 10th of December at 2 PM CET.

Galaxy has grown a lot of the years, going from a project at one university in 2005 to the global community it is today. Several parts of the Galaxy ecosystem have become avowedly and obviously community driven during that time, including tools, code, training, and several other international efforts. It is past time to push this global model to other areas of Galaxy as well.

This webinar will cover: 1) Publicly accessible Galaxy servers on the web (there are over 100 of them); 2) Research and commercial cloud platforms, from Australia (Nectar) to the US (Jetstream, AnVIL), and everywhere in between (CloudLaunch); 3) On your laptop, using pre-packaged containers and virtual machines.

Learn and share software development and system administration skills of Galaxy Interactive Tools. Check out the program (in French) and register to this free virtual event!

The Galaxy Training Network is organizing every 3 months one day dedicated to the training community: collaborative work on the training content but also calls with the community. The next one will be on the 19th of November. Anyone who would like to contribute, learn how to contribute to the Galaxy Training Material or just catch up with the community is very welcome to join.

A new opportunity to engage with the community comes!

Join the ELIXIR BioHackathon to discuss and implement ideas or projects related to challenges proposed by ELIXIR platforms (data, tools, compute, interoperability and training), ELIXIR communities (Human Data, Rare Diseases, Marine Metagenomics, Plant Science, Metabolomics and Proteomics), and a set of common challenges proposed by the sister BioHackathon organised in Japan.

Björn Grüning will be a keynote speaker at the EGI Conference 2020. He will take us on a journey by introducing us to Galaxy, sharing his 10 years+ experiences and know-how in just 45 minutes. Best-practices, tools, workflow development, just a few topics that will be mentioned, not to forget how these contribute to transparent and reproducible research. Come and join us on Tuesday to learn more about the European Galaxy server and Galaxy-based data analytics.

Paper cuts are annoying but easy to fix bugs. We plan to have a one-day contribution fest, dedicated to reducing Paper cuts in Galaxy and its ecosystem. It will be a 24-hours event to span all time zones with our worldwide community.

Kaivan Kamali will give a presentation discussing his experimenting with machine learning tools in Galaxy by applying Singular Value Decomposition (SVD). More specifically, he will cover the basics of linear algebra, eigenvalues/eigenvectors, and principal calculations axes in symmetric and non-symmetric matrices.

Like every second Thursday at 6 pm CET, the Galaxy Developer Roundtable will take place. Today, John Chilton is the presenter.

In the context of the 19th European Conference on Computational Biology (ECCB2020), Björn will give a talk in the session “A glimpse into Global Bioinformatics Communities: Europe - ELIXIR”, check out the details here.

Machine Learning & Omics data: Opportunities for advancing biomedical data analysis in Galaxy

During the July virtual meet-up of the Bioinformatics Hub of Kenya (BHKi), a training on Galaxy will be conducted by Peter van Heusden (SANBI).

We are offering a Galaxy workshop on Processing of Single Cell RNA-Seq Data with Galaxy at the BCC2020 conference.

We are offering a Galaxy workshop on High-throughput molecular dynamics with Galaxy at the BCC2020 conference.

We are offering a Galaxy workshop on Reference data with CVMFS and remote jobs with Pulsar at the BCC2020 conference.

Workshop on Tool Packaging organised by EOSC-Life

Introduction to Machine Learning using Galaxy at Bioinformatics Community Conference 2020

We are offering a Galaxy workshop on Processing of Single Cell RNA-Seq Data with Galaxy at the BCC2020 conference.

The nf-core hackathon in July this year will be fully virtual, so you can contribute to nf-core and get your pipeline started from the comfort of your homes. Bjoern will give a talk about Bioconda and BioContainers and how both technologies are building the fundament of todays reproducible science infrastructure.

Machine Learning in Bioinformatics using Galaxy at 11th International Conference on Information, Intelligence, Systems and Applications

A Webinar/Workshop Series on Introduction to Machine Learning using Galaxy

Galaxy-ELIXIR Webinar Series: FAIR data and Open Infrastructures to tackle the COVID-19 pandemic

Galaxy-ELIXIR Webinar Series: FAIR data and Open Infrastructures to tackle the COVID-19 pandemic

Introduction to Galaxy workshop for the students of University of Isfahan

Galaxy-ELIXIR Webinar Series: FAIR data and Open Infrastructures to tackle the COVID-19 pandemic

Galaxy-ELIXIR Webinar Series: FAIR data and Open Infrastructures to tackle the COVID-19 pandemic

Galaxy-ELIXIR Webinar Series: FAIR data and Open Infrastructures to tackle the COVID-19 pandemic

The Freiburg Galaxy team will participate in the ELIXIR Bioinformatics Industry Forum that will be held online. Registration and programme is accessible here.

Introduction to Galaxy workshop at the beginner level (in Persian)

We are offering a workshop on introduction to machine learning using Galaxy. 35 participants will be selected from all applicants. To apply for attendance, please sign in here.

The Federal Government of Germany is organising the #WirVsVirus Hackathon.

The 2020 Galaxy Admin Training will take place in Barcelona at the beginning of March, find all the details and register here!

ELIXIR France with the support of the ELIXIR Hub and the ELIXIR interoperability platform, the National Bioscience Database Center (NBDC) and the Database Center for Life Science (DBCLS), is organising a BioHackathon in November 2018 in Paris. This BioHackathon will complement and work in collaboration with the BioHackathon planned in Japan at the end of 2019.

We are pleased to announce that GCC2019 will be held in Freiburg, Germany, 1-6 July. Like previous Galaxy Community Conferences, GCC2019 will feature invited keynotes, accepted talks, posters, and demos, birds-of-a-feather gatherings, multiple days of collaborative work, and plenty of opportunities to network with your fellow data-intensive researchers and practitioners. If you are working in data-intensive life science, there is no better place to be.

The Galaxy Training Network is organizing online CoFests (Collaboration/Contribution Fests) every 3 months for a day of the collaborative work on the training content. The next one will be on the 16th of February. Anyone who would like to contribute on any other topics is very welcome to join. During the day, we will also have GTN community calls to discuss the recent changes and future directions.

The Galaxy Training Network is organizing online CoFests (Collaboration/Contribution Fests) every 3 months for a day of the collaborative work on the training content. The next one will be on the 21st of February. Anyone who would like to contribute on any other topics is very welcome to join. During the day, we will also have GTN community calls to discuss the recent changes and future directions.

The Galaxy Training Network has developed an infrastructure to deliver interactive training based on Galaxy: one central place (https://training.galaxyproject.org) to aggregate training materials covering many current research topics. Each topic is supported by different tutorials developed and maintained by the community via a GitHub repository: https://github.com/galaxyproject/training-material.

The 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018) are meeting together in Portland, Oregon, United States, June 25-30, 2018. There will be two days of training, a two+ day meeting, and four days of intense collaboration. The meeting features joint & parallel sessions, shared keynotes, poster & demo sessions, birds-of-a-feather, and social events. GCCBOSC is organized by Oregon Health & Science University and will be at Reed College.

The fifth ELIXIR All Hands meeting will take place 17 - 20 June 2019 in Lisbon.