RNA-seq Analysis using Galaxy

training

From 2020-10-28 to 2020-10-30 - Add to your Calendar

An Introduction to RNA-seq Analysis (Human, Mouse) using Galaxy at University of Isfahan (in Persian)

28th October 2020, 30th October 2020

Description:

The Freiburg Galaxy team and University of Isfahan organize an online workshop in Persian to demonstrate how Galaxy can be used for RNA-seq data analysis.

Agenda:

  • An Introduction to NGS
  • An Introduction to RNA-sequencing (Experimental and In silico)
  • The applications of RNA-seq
  • RNA-seq databases
  • Statistical principals of gene expression analysis: p-value, Log2FC, FPKM
  • Introduction to Galaxy
  • Case study I: Human and Mouse RNA-seq data analysis using HISAT2, FeatureCounts and Limma tools in order to achieve Differential Expressed Genes (DEGs)
  • Case study II:Investigation of downstream pathways relating to DEGs: GO and Pathway Analyses

Target audience: Students (BSc, MSc, or PHD) of biology, medicine, medical engineering and computer sciences clinical laboratory technician.

Speakers:

  • Maryam Kay, Ph.D.
  • Fariba Dehghanian, Assistant Professor, Department of Cell and Molecular Biology & Microbiology, University of Isfahan
  • Alireza Khanteymoori, Postdoc Researcher at the University of Freiburg and member of the European Galaxy team.

Organizers